20.20(S11):Advanced topics: Difference between revisions

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| '''Improving the Lac System for Synthetic Biology''' <br>Penumetcha, P., et al. ''Bios'' (2011) 81(1):7-15.<br>[[Media:Penumetcha etal 2010.pdf| pdf]]
| '''Improving the Lac System for Synthetic Biology''' <br>Penumetcha, P., et al. ''Bios'' (2011) 81(1):7-15.<br>[[Media:Penumetcha etal 2010.pdf| pdf]]
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| '''Logic Modules'''<br>  
| '''Transcription-based Logic Devices'''<br>  
| Wed Feb 16  
| Wed Feb 16  
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|'''De Novo Designed Proteins from a Library of Artificial Sequences Function in Esherichia Coli and Enable Cell Growth''' <br>Fisher MA, et al. ''PLoS One'' (2011)6(1):e15364<br>[[DOI: 10.1371/journal.pone.0015364]]
|'''De Novo Designed Proteins from a Library of Artificial Sequences Function in Esherichia Coli and Enable Cell Growth''' <br>Fisher MA, et al. ''PLoS One'' (2011)6(1):e15364<br>[[DOI: 10.1371/journal.pone.0015364]]
|'''Design of multi-specificity in protein interfaces'''Humphris, EL; Kortemme, T. ''PLoS computational biology'' (2007) 3(8):e164<br>[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.0030164 link]
|'''Design of multi-specificity in protein interfaces'''Humphris, EL; Kortemme, T. ''PLoS computational biology'' (2007) 3(8):e164<br>[[DOI: 10.1371/journal.pcbi.0030164]]
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| '''Tuning the system: directed evolution''' <br>
| '''Tuning the system: directed evolution''' <br>
| Wed Mar 2
| Wed Mar 2
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|'''Using Engineered Scaffold Interactions to Reshape MAP Kinase Pathway Signaling Dynamics''' <br>Bashor CJ, et al. ''Science'' (2008) 319: 1539-1543 <br> [[PMID: 18339942]]
|'''Directed evolution of recombinase specificity by split gene reassembly''' <br>Gersbach, CA, et al. ''NAR'' (2010) 38(12): 4198-4206-1543 <br> [[DOI: 10.1093/nar/gkq125]]
| '''Synthetic protein scaffolds provide modular control over metabolic flux'''<br> Dueber JE, et al. ''Nat Biotech'' (2009) 27(8):753-9.<br>[[PMID: 19648908]]
| '''A dual selection module for directed evolution of synthetic circuits.''' Yokobayashi Y, Arnold FH. ''Nat Comp'' (2005) 4:245–254<br>[[Media:DirEvolTuning NaturalComputing05.pdf| pdf]]
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| '''Functional Network Composition'''<br>  
| '''RNA Engineering'''<br>  
| <font color = blue> Thursday Mar 10</font color>
| <font color = blue> Thursday Mar 10</font color>
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| '''A synthetic genetic edge detection program'''<br>Tabor JJ et al. ''Cell'' (2009) 137(7):1272-81 <br>[[PMID: 19563759]]
| '''Reprogramming Cellular Behavior with RNA Controllers Responsive to Endogenous Proteins'''<br>Culler, SJ, Hoff, KG, Smolke, CD. ''Science'' (2010) 330:1251-1255 <br>[[DOI: 10.1126/science.1192128]]
|'''Diversity-based, model-guided construction of synthetic gene networks with predicted functions''' <br>Ellis T, Wang X, and Collins JJ.  ''Nat Biotech'' (2009) 27(5):465-71<br>[[PMID: 19377462]]  
|'''The Case for RNA''' <br>Chang, CL, Arkin AP.  ''Science'' (2010) 330:1185-1186<br>[[DOI: 10.1126/science.1199495]]  
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| '''Tuning the system: directed evolution''' <br>  
| '''Tuning the system: Network Composition''' <br>  
| Wed Mar 16  
| Wed Mar 16  
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| '''A dual selection module for directed evolution of synthetic circuits.''' Yokobayashi Y, Arnold FH. ''Nat Comp'' (2005) 4:245–254<br>[[Media:DirEvolTuning NaturalComputing05.pdf| pdf]]
| '''A modular positive feedback-based gene amplifier''' Nistala GJ et. al. ''JBE'' (2010) 4:4<br>[[DOI: 10.1186/1754-1611-4-4]]
| '''A fast, robust and tunable synthetic gene oscillator''' <br>Stricker, J. et al. ''Nature'' (2008) 456, 516–519<br>[[PMID: 18971928]]
| '''A fast, robust and tunable synthetic gene oscillator''' <br>Stricker, J. et al. ''Nature'' (2008) 456, 516–519<br>[[PMID: 18971928]]
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