User contributions for Tododge
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12 February 2025
- 17:5717:57, 12 February 2025 diff hist +506 m Schumer lab: Lab group on Sherlock →Lab organization on Sherlock current
28 January 2025
- 18:5418:54, 28 January 2025 diff hist −15 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
8 January 2025
- 06:1406:14, 8 January 2025 diff hist −4 m Schumer lab: Download data to Sherlock from UW (PacBio) →Rename files current
- 00:2700:27, 8 January 2025 diff hist +310 m Schumer lab: Download data to Sherlock from UW (PacBio) →Download data with Globus
11 December 2024
- 18:4218:42, 11 December 2024 diff hist −52 m Schumer lab: Download data to Sherlock from UW (PacBio) →Download data with Globus
- 18:3618:36, 11 December 2024 diff hist +6 m Schumer lab: Download data to Sherlock from UW (PacBio) →Rename files
- 18:3618:36, 11 December 2024 diff hist +15 Schumer lab: Download data to Sherlock from UW (PacBio) →Delete unnecessary files
- 18:3518:35, 11 December 2024 diff hist +176 m Schumer lab: Download data to Sherlock from UW (PacBio) No edit summary
- 18:3218:32, 11 December 2024 diff hist +122 Schumer lab: Download data to Sherlock from UW (PacBio) →Delete unnecessary files
- 18:3118:31, 11 December 2024 diff hist +189 m Schumer lab: Download data to Sherlock from UW (PacBio) →Rename files
- 18:2818:28, 11 December 2024 diff hist +1,753 N Schumer lab: Download data to Sherlock from UW (PacBio) Created page with "==Download data with Globus== 1) info for JJ to fill in the important files are *hifi_reads.bc*.bam and *hifi_reads.bc*.bam.pbi # download all pacbio data from globus. the important files are *hifi_reads.bc*.bam and *hifi_reads.bc*.bam.pbi ==Delete unnecessary files== 1) delete fail_reads/ directory and unassigned.bam files <span style="font-family:Courier;"> cd /path/to/parent/directory/ <span style="font-family:Courier;"> rm -r fail_reads/ <span style="font-fa..."
- 18:0718:07, 11 December 2024 diff hist +5 m Schumer lab:Github and bioinformatics wiki No edit summary
- 18:0418:04, 11 December 2024 diff hist +101 Schumer lab:Github and bioinformatics wiki No edit summary
10 September 2024
- 01:3001:30, 10 September 2024 diff hist −17 m Schumer lab: Commonly used workflows →Variant calling from long-read data
- 01:2701:27, 10 September 2024 diff hist +1,213 m Schumer lab: Commonly used workflows →Variant calling from long-read data
26 August 2024
- 19:1419:14, 26 August 2024 diff hist +396 m Schumer lab: Commonly used workflows →Variant calling from long-read data
- 19:0919:09, 26 August 2024 diff hist +2,487 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
31 May 2024
- 21:0921:09, 31 May 2024 diff hist −39 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
30 April 2024
- 20:3620:36, 30 April 2024 diff hist +38 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 20:3520:35, 30 April 2024 diff hist +21 Schumer lab: Commonly used workflows →Filtering high coverage GATK variant calls
- 20:3220:32, 30 April 2024 diff hist +1,668 m Schumer lab: Commonly used workflows →Filtering high coverage GATK variant calls
- 20:2020:20, 30 April 2024 diff hist +1,096 m Schumer lab: Commonly used workflows →Filtering high coverage GATK variant calls
- 20:1520:15, 30 April 2024 diff hist +1,364 m Schumer lab: Commonly used workflows →Using filtering high coverage GATK variant calls
- 18:5018:50, 30 April 2024 diff hist +65 m Schumer lab: Commonly used workflows →Using GATK variant calls to generate pseudofastas
- 17:3817:38, 30 April 2024 diff hist −112 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
26 March 2024
- 21:5721:57, 26 March 2024 diff hist −64 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
25 March 2024
- 03:5103:51, 25 March 2024 diff hist −1 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 03:5003:50, 25 March 2024 diff hist +201 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 03:4703:47, 25 March 2024 diff hist −7 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 03:4603:46, 25 March 2024 diff hist +3 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 03:4503:45, 25 March 2024 diff hist +1,477 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 03:1803:18, 25 March 2024 diff hist +62 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
13 February 2024
- 17:4117:41, 13 February 2024 diff hist −96 m Schumer lab: Sharing data with collaborators No edit summary current
- 07:2807:28, 13 February 2024 diff hist +202 Schumer lab: Sharing data with collaborators →Sharing data with collaborators
14 October 2023
- 15:3515:35, 14 October 2023 diff hist +3 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
10 October 2023
- 23:3623:36, 10 October 2023 diff hist +137 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 20:1220:12, 10 October 2023 diff hist +145 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 17:0917:09, 10 October 2023 diff hist +1,594 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
29 September 2023
- 17:4217:42, 29 September 2023 diff hist +3 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
28 September 2023
- 18:2918:29, 28 September 2023 diff hist +174 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 18:2618:26, 28 September 2023 diff hist +5 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 18:2518:25, 28 September 2023 diff hist +363 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 17:5117:51, 28 September 2023 diff hist +157 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 17:4917:49, 28 September 2023 diff hist +1,041 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 17:1017:10, 28 September 2023 diff hist −97 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 17:0717:07, 28 September 2023 diff hist +19 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 16:5916:59, 28 September 2023 diff hist +362 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 16:5516:55, 28 September 2023 diff hist +106 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data