User contributions for Tododge
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7 January 2025
- 22:1422:14, 7 January 2025 diff hist −4 m Schumer lab: Download data to Sherlock from UW (PacBio) →Rename files current
- 16:2716:27, 7 January 2025 diff hist +310 m Schumer lab: Download data to Sherlock from UW (PacBio) →Download data with Globus
11 December 2024
- 10:4210:42, 11 December 2024 diff hist −52 m Schumer lab: Download data to Sherlock from UW (PacBio) →Download data with Globus
- 10:3610:36, 11 December 2024 diff hist +6 m Schumer lab: Download data to Sherlock from UW (PacBio) →Rename files
- 10:3610:36, 11 December 2024 diff hist +15 Schumer lab: Download data to Sherlock from UW (PacBio) →Delete unnecessary files
- 10:3510:35, 11 December 2024 diff hist +176 m Schumer lab: Download data to Sherlock from UW (PacBio) No edit summary
- 10:3210:32, 11 December 2024 diff hist +122 Schumer lab: Download data to Sherlock from UW (PacBio) →Delete unnecessary files
- 10:3110:31, 11 December 2024 diff hist +189 m Schumer lab: Download data to Sherlock from UW (PacBio) →Rename files
- 10:2810:28, 11 December 2024 diff hist +1,753 N Schumer lab: Download data to Sherlock from UW (PacBio) Created page with "==Download data with Globus== 1) info for JJ to fill in the important files are *hifi_reads.bc*.bam and *hifi_reads.bc*.bam.pbi # download all pacbio data from globus. the important files are *hifi_reads.bc*.bam and *hifi_reads.bc*.bam.pbi ==Delete unnecessary files== 1) delete fail_reads/ directory and unassigned.bam files <span style="font-family:Courier;"> cd /path/to/parent/directory/ <span style="font-family:Courier;"> rm -r fail_reads/ <span style="font-fa..."
- 10:0710:07, 11 December 2024 diff hist +5 m Schumer lab:Github and bioinformatics wiki No edit summary
- 10:0410:04, 11 December 2024 diff hist +101 Schumer lab:Github and bioinformatics wiki No edit summary
9 September 2024
- 17:3017:30, 9 September 2024 diff hist −17 m Schumer lab: Commonly used workflows →Variant calling from long-read data current
- 17:2717:27, 9 September 2024 diff hist +1,213 m Schumer lab: Commonly used workflows →Variant calling from long-read data
26 August 2024
- 11:1411:14, 26 August 2024 diff hist +396 m Schumer lab: Commonly used workflows →Variant calling from long-read data
- 11:0911:09, 26 August 2024 diff hist +2,487 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
31 May 2024
- 13:0913:09, 31 May 2024 diff hist −39 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
30 April 2024
- 12:3612:36, 30 April 2024 diff hist +38 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 12:3512:35, 30 April 2024 diff hist +21 Schumer lab: Commonly used workflows →Filtering high coverage GATK variant calls
- 12:3212:32, 30 April 2024 diff hist +1,668 m Schumer lab: Commonly used workflows →Filtering high coverage GATK variant calls
- 12:2012:20, 30 April 2024 diff hist +1,096 m Schumer lab: Commonly used workflows →Filtering high coverage GATK variant calls
- 12:1512:15, 30 April 2024 diff hist +1,364 m Schumer lab: Commonly used workflows →Using filtering high coverage GATK variant calls
- 10:5010:50, 30 April 2024 diff hist +65 m Schumer lab: Commonly used workflows →Using GATK variant calls to generate pseudofastas
- 09:3809:38, 30 April 2024 diff hist −112 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
26 March 2024
- 13:5713:57, 26 March 2024 diff hist −64 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
24 March 2024
- 19:5119:51, 24 March 2024 diff hist −1 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 19:5019:50, 24 March 2024 diff hist +201 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 19:4719:47, 24 March 2024 diff hist −7 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 19:4619:46, 24 March 2024 diff hist +3 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 19:4519:45, 24 March 2024 diff hist +1,477 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 19:1819:18, 24 March 2024 diff hist +62 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
13 February 2024
- 09:4109:41, 13 February 2024 diff hist −96 m Schumer lab: Sharing data with collaborators No edit summary current
12 February 2024
- 23:2823:28, 12 February 2024 diff hist +202 Schumer lab: Sharing data with collaborators →Sharing data with collaborators
14 October 2023
- 07:3507:35, 14 October 2023 diff hist +3 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
10 October 2023
- 15:3615:36, 10 October 2023 diff hist +137 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 12:1212:12, 10 October 2023 diff hist +145 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 09:0909:09, 10 October 2023 diff hist +1,594 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
29 September 2023
- 09:4209:42, 29 September 2023 diff hist +3 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
28 September 2023
- 10:2910:29, 28 September 2023 diff hist +174 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 10:2610:26, 28 September 2023 diff hist +5 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 10:2510:25, 28 September 2023 diff hist +363 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 09:5109:51, 28 September 2023 diff hist +157 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 09:4909:49, 28 September 2023 diff hist +1,041 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 09:1009:10, 28 September 2023 diff hist −97 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 09:0709:07, 28 September 2023 diff hist +19 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 08:5908:59, 28 September 2023 diff hist +362 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 08:5508:55, 28 September 2023 diff hist +106 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
27 September 2023
- 15:4015:40, 27 September 2023 diff hist +68 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 15:2815:28, 27 September 2023 diff hist +39 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 15:2515:25, 27 September 2023 diff hist +698 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
- 11:1011:10, 27 September 2023 diff hist −10 Schumer lab: Commonly used workflows →Genome assembly with hifiasm - PacBio HiFi data
