User contributions for Tododge

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Results for Tododge talk block log uploads logs

A user with 146 edits. Account created on 2 November 2021.

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17:5717:57, 12 February 2025 diff hist +506 m Schumer lab: Lab group on Sherlock →Lab organization on Sherlock current

18:5418:54, 28 January 2025 diff hist −15 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data

06:1406:14, 8 January 2025 diff hist −4 m Schumer lab: Download data to Sherlock from UW (PacBio) →Rename files current
00:2700:27, 8 January 2025 diff hist +310 m Schumer lab: Download data to Sherlock from UW (PacBio) →Download data with Globus

18:4218:42, 11 December 2024 diff hist −52 m Schumer lab: Download data to Sherlock from UW (PacBio) →Download data with Globus
18:3618:36, 11 December 2024 diff hist +6 m Schumer lab: Download data to Sherlock from UW (PacBio) →Rename files
18:3618:36, 11 December 2024 diff hist +15 Schumer lab: Download data to Sherlock from UW (PacBio) →Delete unnecessary files
18:3518:35, 11 December 2024 diff hist +176 m Schumer lab: Download data to Sherlock from UW (PacBio) No edit summary
18:3218:32, 11 December 2024 diff hist +122 Schumer lab: Download data to Sherlock from UW (PacBio) →Delete unnecessary files
18:3118:31, 11 December 2024 diff hist +189 m Schumer lab: Download data to Sherlock from UW (PacBio) →Rename files
18:2818:28, 11 December 2024 diff hist +1,753 N Schumer lab: Download data to Sherlock from UW (PacBio) Created page with "==Download data with Globus== 1) info for JJ to fill in the important files are *hifi_reads.bc*.bam and *hifi_reads.bc*.bam.pbi # download all pacbio data from globus. the important files are *hifi_reads.bc*.bam and *hifi_reads.bc*.bam.pbi ==Delete unnecessary files== 1) delete fail_reads/ directory and unassigned.bam files <span style="font-family:Courier;"> cd /path/to/parent/directory/ <span style="font-family:Courier;"> rm -r fail_reads/ <span style="font-fa..."
18:0718:07, 11 December 2024 diff hist +5 m Schumer lab:Github and bioinformatics wiki No edit summary
18:0418:04, 11 December 2024 diff hist +101 Schumer lab:Github and bioinformatics wiki No edit summary

01:3001:30, 10 September 2024 diff hist −17 m Schumer lab: Commonly used workflows →Variant calling from long-read data
01:2701:27, 10 September 2024 diff hist +1,213 m Schumer lab: Commonly used workflows →Variant calling from long-read data

19:1419:14, 26 August 2024 diff hist +396 m Schumer lab: Commonly used workflows →Variant calling from long-read data
19:0919:09, 26 August 2024 diff hist +2,487 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data

21:0921:09, 31 May 2024 diff hist −39 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data

20:3620:36, 30 April 2024 diff hist +38 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
20:3520:35, 30 April 2024 diff hist +21 Schumer lab: Commonly used workflows →Filtering high coverage GATK variant calls
20:3220:32, 30 April 2024 diff hist +1,668 m Schumer lab: Commonly used workflows →Filtering high coverage GATK variant calls
20:2020:20, 30 April 2024 diff hist +1,096 m Schumer lab: Commonly used workflows →Filtering high coverage GATK variant calls
20:1520:15, 30 April 2024 diff hist +1,364 m Schumer lab: Commonly used workflows →Using filtering high coverage GATK variant calls
18:5018:50, 30 April 2024 diff hist +65 m Schumer lab: Commonly used workflows →Using GATK variant calls to generate pseudofastas
17:3817:38, 30 April 2024 diff hist −112 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data

21:5721:57, 26 March 2024 diff hist −64 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data

17:4117:41, 13 February 2024 diff hist −96 m Schumer lab: Sharing data with collaborators No edit summary current
07:2807:28, 13 February 2024 diff hist +202 Schumer lab: Sharing data with collaborators →Sharing data with collaborators

15:3515:35, 14 October 2023 diff hist +3 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data

23:3623:36, 10 October 2023 diff hist +137 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
20:1220:12, 10 October 2023 diff hist +145 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data
17:0917:09, 10 October 2023 diff hist +1,594 m Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data

17:4217:42, 29 September 2023 diff hist +3 Schumer lab: Commonly used workflows →Genome assembly from PacBio HiFi data

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