User contributions for R. Eric Collins

26 June 2012

• 14:1414:14, 26 June 2012 diff hist +800 User:R. Eric Collins/Goldschmidt No edit summary current
• 14:0514:05, 26 June 2012 diff hist −9 User:R. Eric Collins/Goldschmidt No edit summary
• 14:0114:01, 26 June 2012 diff hist −1 User:R. Eric Collins/Goldschmidt No edit summary
• 14:0114:01, 26 June 2012 diff hist +14 User:R. Eric Collins/Goldschmidt No edit summary
• 13:5313:53, 26 June 2012 diff hist +676 N User:R. Eric Collins/Goldschmidt New page: IMG Genomics Demonstration Find out what the Mystery Sequence is and to which metabolic pathway it belongs * Go to the [http://img.jgi.doe.gov JGI] website. The Joint Geno...
• 13:4713:47, 26 June 2012 diff hist +17 User:R. Eric Collins No edit summary current
• 13:4613:46, 26 June 2012 diff hist +80 User:R. Eric Collins No edit summary
• 13:4413:44, 26 June 2012 diff hist −1,141 User:R. Eric Collins Replacing page with 'Goldschmidt 2012 Marine Biological Lab 2011'
• 13:4413:44, 26 June 2012 diff hist +43 User:R. Eric Collins No edit summary
• 13:4213:42, 26 June 2012 diff hist +567 N User:R. Eric Collins/Goldschmidt/sequence New page: >mystery sequence<br> CTTCGACTACGATCTGAAGAAGATGGCCGCGAAGATCTACGGCACCGAGG<br> ACGACAAGCACCCGGGCTGCGCCCGGACTTACCGGTACGCCGACCGGTTC<br> ATCGGCGGGAAAGTCACCCTGGTCAACCCCCCGAAGATGAACGAGCCTTA<br> T... current
• 13:4213:42, 26 June 2012 diff hist −567 User:R Eric Collins/Goldschmidt/sequence Removing all content from page current
• 13:4113:41, 26 June 2012 diff hist +567 N User:R Eric Collins/Goldschmidt/sequence New page: >mystery sequence<br> CTTCGACTACGATCTGAAGAAGATGGCCGCGAAGATCTACGGCACCGAGG<br> ACGACAAGCACCCGGGCTGCGCCCGGACTTACCGGTACGCCGACCGGTTC<br> ATCGGCGGGAAAGTCACCCTGGTCAACCCCCCGAAGATGAACGAGCCTTA<br> T...
• 13:4113:41, 26 June 2012 diff hist +30 Goldschmidt/sequence No edit summary current
• 13:4013:40, 26 June 2012 diff hist −8 Goldschmidt/sequence No edit summary
• 13:3613:36, 26 June 2012 diff hist −1 Goldschmidt/sequence No edit summary
• 13:3613:36, 26 June 2012 diff hist +4 Goldschmidt/sequence No edit summary
• 13:3613:36, 26 June 2012 diff hist +15 Goldschmidt/sequence No edit summary
• 13:3513:35, 26 June 2012 diff hist +527 N Goldschmidt/sequence New page: >mystery sequence CTTCGACTACGATCTGAAGAAGATGGCCGCGAAGATCTACGGCACCGAGG ACGACAAGCACCCGGGCTGCGCCCGGACTTACCGGTACGCCGACCGGTTC ATCGGCGGGAAAGTCACCCTGGTCAACCCCCCGAAGATGAACGAGCCTTA TGACGCGTTCTTCCTGA...

3 August 2011

• 01:3101:31, 3 August 2011 diff hist +295 User:R. Eric Collins/MBL/Popgen No edit summary current

2 August 2011

• 23:0823:08, 2 August 2011 diff hist +17 User:R. Eric Collins/MBL No edit summary current
• 20:4920:49, 2 August 2011 diff hist +969 N User:R. Eric Collins/MBL/Rokas New page: [http://as.vanderbilt.edu/rokaslab/publications.html Antonis Rokas] == Evolutionary Genomics == * Kahn 2011 increase in sequencing quality over time * CRAP: Cluster Reconstruction ... Ph... current
• 18:0318:03, 2 August 2011 diff hist +26 User:R. Eric Collins/MBL No edit summary
• 16:0216:02, 2 August 2011 diff hist +409 User:R. Eric Collins/MBL/Edwards No edit summary current
• 15:5015:50, 2 August 2011 diff hist +879 User:R. Eric Collins/MBL/Edwards No edit summary
• 14:5514:55, 2 August 2011 diff hist +186 User:R. Eric Collins/MBL/PAUP No edit summary current
• 14:4414:44, 2 August 2011 diff hist +581 N User:R. Eric Collins/MBL/Edwards New page: * most common gene tree can not match the species tree (laura k mentioned this 'anomaly zone') * likelihood methods based on coalescence can correct for this given many loci * in this case...
• 14:0714:07, 2 August 2011 diff hist +28 User:R. Eric Collins/MBL No edit summary
• 02:0902:09, 2 August 2011 diff hist +153 N User:R. Eric Collins/MBL/STRUCTURE New page: == MIGRATE-N == * Harmonic Mean is bad --> doesn't converge on right solution even with many chains and long runs * Thermodynamic integration converges current

1 August 2011

• 13:3013:30, 1 August 2011 diff hist +28 User:R. Eric Collins/MBL No edit summary

30 July 2011

• 18:1318:13, 30 July 2011 diff hist +23 User:R. Eric Collins/MBL No edit summary
• 15:2315:23, 30 July 2011 diff hist +343 User:R. Eric Collins/MBL/Felsenstein No edit summary current
• 14:2414:24, 30 July 2011 diff hist +1,012 N User:R. Eric Collins/MBL/Felsenstein New page: == Phylogeny & Morphometrics == * genetic covariance * selective covariance ** the same environmental conditions select changes in two or more traits -- even though they may have no genet...
• 13:1613:16, 30 July 2011 diff hist +30 User:R. Eric Collins/MBL No edit summary
• 13:1513:15, 30 July 2011 diff hist +261 User:R. Eric Collins/MBL/Bayes No edit summary current

29 July 2011

• 21:0021:00, 29 July 2011 diff hist +91 User:R. Eric Collins/MBL/Popgen No edit summary
• 20:4520:45, 29 July 2011 diff hist +835 User:R. Eric Collins/MBL/Popgen No edit summary
• 18:1318:13, 29 July 2011 diff hist +496 User:R. Eric Collins/MBL/Popgen No edit summary
• 15:2615:26, 29 July 2011 diff hist +1,031 User:R. Eric Collins/MBL/Popgen No edit summary
• 14:1514:15, 29 July 2011 diff hist +1,055 N User:R. Eric Collins/MBL/Popgen New page: [http://molevol.mbl.edu/wiki/index.php/Peter_Beerli Peter Beerli] == Population Genetics == * assumption of independence among sequences violated in a populatino * Wright-Fisher ** indiv...
• 13:0813:08, 29 July 2011 diff hist +33 User:R. Eric Collins/MBL No edit summary

28 July 2011

• 19:3219:32, 28 July 2011 diff hist +479 N User:R. Eric Collins/MBL/Clocks New page: [http://molevol.mbl.edu/wiki/index.php/Msuchard Marc Suchard] == Molecular Clocks == P(t1,t2)* g(t1) P(t1,t2) is well-formed Yule process g(t1) is a prior distribution of divegence time f... current
• 18:0818:08, 28 July 2011 diff hist +30 User:R. Eric Collins/MBL No edit summary
• 15:5315:53, 28 July 2011 diff hist +476 N User:R. Eric Collins/MBL/Bayes New page: [http://molevol.mbl.edu/wiki/index.php/Paul_Lewis Paul Lewis] == Bayesian Phylogenetics == * probabilities are applied to intervals, not points ** curve is probability density, not proba...
• 13:1213:12, 28 July 2011 diff hist +35 User:R. Eric Collins/MBL No edit summary
• 01:3601:36, 28 July 2011 diff hist +623 User:R. Eric Collins/MBL/PAML No edit summary current
• 00:5300:53, 28 July 2011 diff hist −5 User:R. Eric Collins/MBL/PAML No edit summary
• 00:5200:52, 28 July 2011 diff hist +20 User:R. Eric Collins/MBL/PAML No edit summary
• 00:5000:50, 28 July 2011 diff hist +910 User:R. Eric Collins/MBL/PAML No edit summary

27 July 2011

• 23:0823:08, 27 July 2011 diff hist +57 N User:R. Eric Collins/MBL/PAML New page: [http://myweb.dal.ca/js551958/PAML_lab/lab.html PAML Lab]
• 23:0723:07, 27 July 2011 diff hist +20 User:R. Eric Collins/MBL No edit summary