User contributions for Jessica A. DaMota
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30 March 2021
- 15:4515:45, 30 March 2021 diff hist +80 TMPRSS2 Lab Notebook →Materials & Methods: uploaded Jessica's Materials & Methods Draft
- 15:4415:44, 30 March 2021 diff hist +95 N File:DaMota Materials and Methods.pdf Materials and Methods section draft for senior capstone project by Jessica DaMota current
24 March 2021
- 17:4217:42, 24 March 2021 diff hist +796 TMPRSS2 Lab Notebook →How to Check for Clashes/Hindrance: added methodology of how to check for clashes/hindrance
- 17:4117:41, 24 March 2021 diff hist −795 TMPRSS2 Lab Notebook →V280M: removed methodology for steric analysis from this section
- 17:4017:40, 24 March 2021 diff hist +795 TMPRSS2 Lab Notebook →V280M: added methodoloyg fo steric analysis of V280M
- 17:1417:14, 24 March 2021 diff hist +94 TMPRSS2 Lab Notebook →V280M: updated steric hindrance description
- 16:4116:41, 24 March 2021 diff hist +358 TMPRSS2 Lab Notebook →Chimera: uploaded V280M image and description
- 16:3516:35, 24 March 2021 diff hist +73 N File:TMPRSS2 V280M.png image of TMPRSS2 SNP V280M overlaid on the wild type strain current
19 March 2021
- 14:3714:37, 19 March 2021 diff hist +71 TMPRSS2 Lab Notebook →Capstone
- 14:3614:36, 19 March 2021 diff hist +89 N File:Introduction Draft DaMota.pdf Draft of Introduction Section of Senior Capstone Project about TMPRSS2 SNPs current
26 February 2021
- 15:3715:37, 26 February 2021 diff hist +68 TMPRSS2 Lab Notebook →Capstone: uploaded Jessica's Discussion Draft 1
- 15:3615:36, 26 February 2021 diff hist +66 N File:DaMota DiscussionDraft.pdf Draft of Discussion section of Senior Capstone Paper current
19 February 2021
- 15:2415:24, 19 February 2021 diff hist +241 TMPRSS2 Lab Notebook →Assessment of TMPRSS2 Model: added descriptions of MolProbity and Uppsala Ramacahdnran Server, including paper that cited MolProbity
- 15:1315:13, 19 February 2021 diff hist +38 TMPRSS2 Lab Notebook →Assessment of TMPRSS2 Model: hyperlinked MolProbity
- 15:1115:11, 19 February 2021 diff hist +119 TMPRSS2 Lab Notebook →I-TASSER: uploaded Ramachandran plot of TMPRSS2 generated by I-TASSER
- 15:1015:10, 19 February 2021 diff hist +121 TMPRSS2 Lab Notebook →RaptorX: uploaded Ramachandran plot for TMPRSS2 generated by RaptorX
- 15:0615:06, 19 February 2021 diff hist +213 TMPRSS2 Lab Notebook →Assessment of TMPRSS2 Model: uploaded summary statistics of predicted structure for RaptorX and I-TASSER
- 14:5914:59, 19 February 2021 diff hist +88 N File:SummaryStats ItasserTMPRSS2 Mol.png Summary Statistics of viability of TMPRSS2 structure predicted by I-TASSER current
- 14:5714:57, 19 February 2021 diff hist +86 N File:Itasser tmprss2-rama mol.pdf MolProbity Ramachandran plots of TMPRSS2 structure predicted by I-TASSER current
- 14:5514:55, 19 February 2021 diff hist +90 N File:SummaryStats RaptorXTMPRSS2 Mol.png Summary of statistics on structure viability of TMPRSS2 predicted by RaptorX current
- 14:5214:52, 19 February 2021 diff hist +70 N File:Mol RaptorX TMPRSS2-rama.pdf Ramachandran Plots of TMPRSS2 model predicted by RaptorX current
- 14:4914:49, 19 February 2021 diff hist +408 TMPRSS2 Lab Notebook →Assessment of TMPRSS2 Model: MolProbity Methodology uploaded
- 14:2114:21, 19 February 2021 diff hist +573 TMPRSS2 Lab Notebook added assessment of TMPRSS2 model section and 2 plot generating softwares
12 February 2021
- 17:5817:58, 12 February 2021 diff hist +63 TMPRSS2 Lab Notebook →Capstone: uploaded Jessica's Results Draft 1
- 17:5717:57, 12 February 2021 diff hist +50 N File:ResultsDraft1 DaMota.pdf draft of results for senior capstone current
- 14:5314:53, 12 February 2021 diff hist +41 TMPRSS2 Lab Notebook →SNP Population Frequencies: uploaded SNP frequency graph
- 14:5114:51, 12 February 2021 diff hist +111 N File:SNPFrequencies DaMota.png Relative Frequencies of TMPRSS2 SNPs out of the 18 SNPs of interest, for senior capstone research current
29 January 2021
- 17:2517:25, 29 January 2021 diff hist +40 User:Jessica A. DaMota →Capstone Project: uploaded capstone outline current
- 17:2417:24, 29 January 2021 diff hist +50 TMPRSS2 Lab Notebook →Capstone: uploaded Jessica's Outline
- 17:2317:23, 29 January 2021 diff hist +114 N File:Outline DaMota .pdf Outline of Capstone Research paper analyzing TMPRSS2 SNPs and their effects on SARS-CoV-2 infection. current
27 January 2021
- 18:5518:55, 27 January 2021 diff hist −15 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: updated rs147711290 to L91P and L91R and respective predictions
- 18:2918:29, 27 January 2021 diff hist +2 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: added SIFT prediction of rs768173297
- 18:2618:26, 27 January 2021 diff hist −76 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: removed SNPS from table that were not categorized as missense
- 18:2318:23, 27 January 2021 diff hist −58 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: removed SNPS from table that were not categorized as missense
- 18:2018:20, 27 January 2021 diff hist −372 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: removed SNPS from table that were not categorized as missense
- 18:1118:11, 27 January 2021 diff hist −1 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: fixed table formatting
- 18:1018:10, 27 January 2021 diff hist +3 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: fixed table formatting
- 18:0918:09, 27 January 2021 diff hist +850 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: added rs200291871- rs768173297 predictions to table
22 January 2021
- 17:3217:32, 22 January 2021 diff hist +346 User:Jessica A. DaMota →COVID-19 Research Project: uploaded annotated bibliography
- 17:2817:28, 22 January 2021 diff hist +80 TMPRSS2 Lab Notebook →Data and Files: uploaded Jessica's Annotated Bibliography
- 17:2617:26, 22 January 2021 diff hist +108 N File:Annotated Bibliography JDamota.pdf Annotated Bibliography of COVID-19 research focused on TMPRSS2 SNPs written by Jessica DaMota. current
- 17:2417:24, 22 January 2021 diff hist +82 N File:Annotated Bibliography.pdf Annotated Bibliography of COVID-19 research focused on TMPRSS2 SNPs. current
- 15:4115:41, 22 January 2021 diff hist +50 TMPRSS2 Lab Notebook →Structural Model of TMPRSS4: linked the HHPRED model
- 15:3915:39, 22 January 2021 diff hist +637 TMPRSS2 Lab Notebook →Structural Model of TMPRSS4: added FASTA sequence of TMPRSS4
- 15:3515:35, 22 January 2021 diff hist +178 TMPRSS2 Lab Notebook →TMPRSS4: uploaded image of TMPRSS4 model from HHPRED
- 15:3215:32, 22 January 2021 diff hist +72 N File:TMPRSS4 HHPRED.png 3D visual model of TMPRS44 generated using HHPred Software current
- 15:0315:03, 22 January 2021 diff hist −10 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: added PolyPhen-2 predictions of rs2070788, rs383510, rs139010197
- 14:3914:39, 22 January 2021 diff hist +4 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: added PolyPhen-2 predictions of rs353163
- 14:3414:34, 22 January 2021 diff hist +2 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: added PolyPhen-2 predictions of rs977728
- 14:2914:29, 22 January 2021 diff hist +3 TMPRSS2 Lab Notebook →TMPRSS2 SNP Predictions: added PolyPhen-2 predictions of rs75603675 G8D