Michael R. Pina Week 4

Activity 1

• The accession number of the sequence is AF016768.
• The sequence comes from subject 1; the definition section of the record contains this information as well as other information such as which visit.
• The Biology Workbench does not seem the most user friendly, but it works just fine and gets the job done. I was able to align 4 sequences acquired from GenBank without any problems.

Activity 2

Part 1: Looking at clustering across subjects

My tree (linked below) shows that at the first visit, clones within each subject are clustered pretty close together which shows that there is not a lot of divergence. Subject 3 shows the most diversity from the others as it it is the furthest from the middle point.

Part 2: Quantifying diversity within and between subjects

Table 3

Table 4

Files

Visit 1, subjects 1-9

Visit 1, subjects 10-15

Tree

Class Journal Entries	Individual Journal Entries	My Lab Notebook
Class Journal Week 2	Individual Week 2	Lab Notebook
Class Journal Week 3	Individual Week 3
Class Journal Week 4	Individual Week 4
Class Journal Week 5	Individual Week 5
Class Journal Week 6	Individual Week 6
Class Journal Week 7	Individual Week 7
Class Journal Week 8	Individual Week 8
Class Journal Week 9	Individual Week 9
Class Journal Week 10	Individual Week 10
Class Journal Week 11	Individual Week 11
Class Journal Week 12	Individual Week 12
Class Journal Week 13	Individual Week 13
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