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PUBLICATIONS (h-index: 49, TOTAL CITATIONS:> 9900 updated on 11/2/2020

Summary: 120 journal papers, 30 issued or pending patents, 56 peer reviewed conference proceedings, 2 book and 11 book chapters. Please direct any questions regarding publications or reprints to Dr. Kim; [dhkim at jhu dot edu]

Kim Lab Cover Art





Selected Journal Publications and Book Chapters

[+] 2020

[146] Shin YJ, Shafranek R, Tsui JH, Walcott J, Nelson A, Kim DH, “3D bioprinting of mechanically tunable composite bioinks from cardiac decellularized extracellular matrix,” Acta Biomaterialia, 2020. (in press) Article

[145] Choi JS, Park HB, Tsui JH, Hong BY, Kim DH, Kim HJ, “Hybrid gold/DNA nanowire circuit with sub-10 nm nanostructure arrays,” Microsystems and Nanoengineering, 6:91, 2020. (Featured as a Cover Article) Article

[144] Choi JS, Lee HJ, Rajaraman S, Kim DH, “Recent advances in three-dimensional microelectrode array technologies for in vitro and in vivo cardiac and neuronal interfaces,” Biosensors and Bioelectronics, 171(1):112687, 2020. Article

[143] Bugg D, Bretherton RC, Kim P, Olszewski E, Nagle A, Schumacher AE, Chu N, Gunaje J, DeForest CA, Stevens K, Kim DH, Davis JM, “Infarct collagen topography regulates fibroblast fate via p38-Yes-associated protein transcriptional enhanced associate domain signals,” Circulation Research, 127(10):1306-1322, 2020. Article

[142] Steinway SN, Saleh J, Koo BK, Delacour D, Kim DH, “Microphysiological models of human intestine and gut microbiome in health and disease,” Frontiers in Bioengineering and Biotechnology, 8:725, 2020. Article

[141] Choi JS, Smith AST, Williams NP, Matsubara T, Choi M, Kim JW, Kim HJ, Choi SK, Kim DH, “Nanopatterned Nafion microelectrode arrays for in vitro cardiac electrophysiology,” Advanced Functional Materials, 30(25):1910660, 2020. Article

[140] Smith AST, Choi E, Gray K, Macadangdang J, Ahn EH, Clark EC, Laflamme MA, Wu JC, Murry CE, Tung L, Kim DH, “NanoMEA: a tool for high-throughput, electrophysiological phenotyping of patterned excitable cells,” Nano Letters, 20(3):1561-1570, 2020. (Featured as a Supplementary Cover) Article

[139] Mandrycky C, Williams NP, Batalov I, El-Nachef D, Davis J, Kim DH, DeForest CA, Zheng Y, Stevens KR, Sniedecki NJ, “Engineering heart morphogenesis,” Trends in Biotechnology, 38(8):835-845, 2020. Article

[138] Miller CP, Shin WJ, Ahn EH, Kim HJ, Kim DH, “Engineering microphysiological immune system responses on chips,” Trends in Biotechnology, 38(8):857-872, 2020. Article

[137] Williams NP, Rhodehamel M, Yan C, Smith AST, Jiao A, Murry CE, Scatena M, *Kim DH, “Engineering 3D tubular tissues with flexible thermoresponsive nanopatterned substrates,” Biomaterials, 240:119856, 2020. Article

[136] Nguyen VD, Min HK, Kim DH, Kim CS, Han J, Park JO, Choi E, “Macrophage-mediated delivery of multifunctional nanotherapeutics for synergistic chemo-photothermal therapy of solid tumors,” ACS Applied Materials and Interfaces, 12(9):10130-10141, 2020. Article

[135] Raja G, Cao S, Kim DH, Kim TJ, “Mechanoregulation of titanium dioxide nanoparticles in cancer therapy,” Materials Science and Engineering C: Materials for Biological Applications, 107:110303, 2020. Article

[134] Pioner JM, Guan X, Klaiman JM, Racca AW, Pabon L, Muskheli V, Macadangdang J, Ferrantini C, Hoopmann MR, Moritz RL, Kim DH, Tesi C, Poggesi C, Murry CE, Childers MK, Mack DL, Regnier M, “Absence of full-length dystrophin impairsnormal maturation and contraction of cardiomyocytes derived from human induced pluripotent stem cells,” Cardiovascular Research, 116(2):368-382, 2020. Article

[+] 2019

[133] Smith PT, Narupai B, Tsui JH, Millik SC, Shafranek RT, Kim DH, Nelson A, “Additive manufacturing of bovine serum albumin-based hydrogels and bioplastics,” Biomacromolecules , 21(2):484-492, 2019. Article

[132] Miklas JW, Clark E, Levy S, Detraux D, Leonard A, Beussman K, Showalter MR, Smith AT, Hofsteen P, Yang X, Macadangdang J, Manninen T, Raftery D, Madan A, Suomalainen A, Kim DH, Murry CE, Fiehn O, Sniadecki NJ, Wang Y, Ruohola-Baker H, “TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes,” Nature Communications , 10(1):4671, 2019. Article

[131] Zaunbrecher RJ, Abel AN, Beussman K, Leonard A, von Frieling-Salewsky M, Fields PA, Pabon L, Reinecke H, Yang X, Macadangdang J, Kim DH, Linke WA, Sniadecki NJ, Regnier M, Murry CE, “Cronos Titin is expressed in human cardiomyocytes and necessary for normal sarcomere function,” Circulation, 140:1647-1660, 2019. Article

[130] Kim JH, Park BG, Kim S, Lee DH, Lee G, Park JY, Lee J, Kim DH, Choi BO, Lee KB, Kim JH. “Nanotopographical regulation of pancreatic islet-like cluster formation from human pluripotent stem cells using a gradient-pattern chip,” Acta Biomaterialia, 95(1):337-347, 2019. Article

[129] Bertero A, Fields PA, Smith AST, Leonard A, Beussman K, Sniadecki NJ, Kim DH, Tse HF, Pabon L, Shendure J, Noble WS, Murry CE, “Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy,” Journal of Cell Biology , 218(9):2919-2944, 2019. Article

[128] J.W. Miklas, S. Levi, D. Detraux, A. Leonard, K. Beussman, P. Hofsteen, C. Friedman, X. Yang, J. Macadangdang, A. Madan, N. Palpant, D.H. Kim, C.E. Murry, N.J. Sniadecki, Y. Wang, and H. Ruohola-Baker, “Mitochondrial tri-functional protein deficiency causes defective calcium dynamics resulting in cardiac arrhythmias,” Nature Communications, 2019. (accepted)

[127] J.S. Park*, D.H. Kim*, S.R. Shah, H.N. Kim, Kshitiz2, P. Kim, A. Quiñones-Hinojosa, and A. Levchenko, “Switch-like enhancement of epithelial-mesenchymal transition by YAP through feedback regulation of WT1 and small Rho-family GTPases,” Nature Communications, 10: 2797, 2019. Article

[126] J.M. Pioner, X. Guan, J.M. Klaiman, A.W. Racca, L. Pabon, V. Muskheli, J. Macadangdang, C. Ferrantini, M.R. Hoopmann, R.L. Moritz, D.H. Kim, C. Tesi, C. Poggesi, C.E. Murry, M.K. Childers, D.L. Mack, and M. Regnier, “Absence of full-length dystrophin impairs normal maturation and contraction of cardiomyocytes derived from human induced pluripotent stem cells,” Cardiovascular Research, 2019. (in press) Article

[125] J. Miklas, M. Salick, and D.H. Kim, “High-throughput contractility assay for human stem cell-derived cardiomyocytes: one beat closer to tracking heart muscle dynamics,” Circulation Research, pp. 1146-1148, 2019. Article

[124] H.N. Kim, N.L. Habbit, C.Y. Su, N. Choi, E.H. Ahn, E.A. Lipke, and D.H. Kim, “Microphysiological systems as enabling tools for modeling complexity in the tumor microenvironment and accelerating cancer drug development,” Advanced Functional Materials, 2019. (Featured as a Front Cover) Article

[123] D.J. Kim, H.J. Lee, S.W. Han, M. Scatena, D.H. Kim, and J.B. Lee, “Immunostimulatory effects triggered by self-assembled microspheres with tandem repeats of polymerized RNA strands,” Advanced Healthcare Materials, pp. 1801395, 2019. Article (Featured as a Front Cover)

[122] J.K. Kim, Y.J. Shin, L.J. Ha, D.H. Kim#, and D.H. Kim#, “Unraveling the mechanobiology of immune system,” Advanced Healthcare Materials, pp. 1801332, 2019. (Featured as an Inside Cover) Article

[+] 2018

[121] T.J. Kim, J. Sun, L. Lei, J. Seong, D.H. Kim, and Y. Wang, “Matrix rigidity-dependent regulation of Ca2+ at plasma membrane microdomains by FAK visualized by fluorescence resonance energy transfer,” Advanced Science, pp. 1801290, 2018. Article

[120] J. Macadangdang, J. Miklas, A.S.T. Smith, E. Choi, W. Leung, Y. Yang, X. Guan, S. S. Lee, M.R. Salick, M. Regnier, D. Mack, M.K. Childers, H. Ruohola-Baker, and D.H. Kim, “Engineered developmental niche enables predictive phenotypic screening in human dystrophic cardiomyopathy,” BioRxiv, 2018. Article

[119] A.S.T. Smith, E. Choi, K. Gray, J. Macadangdang, E.H. Ahn, E.C. Clark, P. Tyler, M. Laflamme, L. Tung, J.C. Wu, C.E. Murry, and D.H. Kim, “NanoMEA: a versatile platform for high-throughput analysis of structure-function relationships in human iPSC-derived excitable cells and tissues,” BioRxiv, 2018. Article

[118] K.C. Yang, A. Breitbart, W.J. De Lange, P. Hofsteen, A. Futakuchi-Tsuchida, J. Xu, C. Schopf, M.V. Razumova, A. Jiao1, R. Boucek, L. Pabon, H. Reinecke, D.H. Kim, J.C. Ralphe, M. Regnier, and C.E. Murry, “Novel adult-onset systolic cardiomyopathy due to MYH7 E848G mutation in patient-derived induced pluripotent stem cells,” Journal of the American College of Cardiology: Basic to Translational Science, vol. 3, pp. 728-740, 2018. Article

[117] S.J. Kim, P.D. Tatman, D.H. Song, A.O. Gee, D.H. Kim, and S.J. Kim, “Nanotopographic cues and stiffness control of tendon-derived stem cells from diverse conditions,” International Journal of Nanomedicine, vol. 13, pp. 217-7227, 2018. Article

[116] J.H. Tsui, D.M.P. Yama, N.A. Ostrovsky-Snider, J.D. Larson, A.R. Murphy, and D.H. Kim, “Conductive silk-polypyrrole composite scaffolds with bioinspired nanotopographic cues for cardiac tissue engineering,” Journal of Materials Chemistry B, vol.6, pp. 7185-7196, 2018. Article

[115] N. Tripathy and D.H. Kim, “Metal oxide modified ZnO nanomaterials for biosensor applications,” Nano Convergence, 5:27, 2018. Article

[114] D.H. Kim, A.J. Ewald, J.S. Park, Kshitiz, M.K. Kwak, R.S. Gray, C.-Y. Su, J. Seo, S.S. An, and A. Levchenko, “Biomechanical interplay between anisotropic re-organization of cells and the surrounding matrix underlies transition to invasive cancer spread,” Scientific Reports, 8: 14210, 2018. Article

[113] A. Jiao, C.T. Moerk, N. Penland, M. Perla, J. Kim, A.S.T. Smith, C.E. Murry, and D.H. Kim, “Regulation of skeletal myotube formation and alignment by nanotopographically controlled cell-secreted extracellular matrix,” Journal of Biomedical Materials Research Part A, vol. 106, pp. 1543-1551, 2018. Article

[112] K. Uto, T. Aoyagi, D.H. Kim, and M. Ebara, “Free-standing nanopatterned poly(e-caprolactone) thin films as a multifunctional scaffold,” IEEE Transactions on Nanotechnology, vol. 17, pp. 389-392, 2018. Article

[111] P. Kim, N. Chu, J. Davis, and D.H. Kim, “Mechanoregulation of myofibroblast fate and cardiac fibrosis,” Advanced Biosystems, vol. 2, pp. 1700172, 2018. Article

[110] J. Park, D.H. Kim, and A. Levchenko, “Topotaxis: a new mechanism of directed cell navigation in density gradients of extracellular matrix,” Biophysical Journal, vol. 114, pp. 1257-1263, 2018. Article

[109] V. Le, J. Lee, S. Chaterji, A. Spencer, Y. Liu, P. Kim, H. Yeh, D.H. Kim, and A.B. Baker, “Syndecan-1 in mechanosensing of nanotopological cues in engineered materials,” Biomaterials, vol. 155, pp. 13-24, 2018. Article

[+] 2017

[108] J.H. Tsui, K. Janebodin, N. Ieronimakis, D. Yama, H.S. Yang, R. Chavanachat, A.L. Hays, H.S. Lee, M. Reyes, and D.H. Kim, “Harnessing sphingosine-1-phosphate signaling and nanotopographical cues to regulate skeletal muscle maturation and vascularization,” ACS Nano, vol. 11, pp. 11954–11968, 2017. Article

[107] J.H. Kim, S.Y. Ko, J.H. Lee, D.H. Kim, and J.H. Yun, “Evaluation of the periodontal regenerative properties of patterned human periodontal ligament stem cell sheets,” Journal of Periodontal and Implant Science, vol. 47, pp. 402-415, 2017. Article

[106] S. Chaterji, E.H. Ahn, and D.H. Kim, “CRISPR genome engineering for human pluripotent stem cell research,” Theranostics, vol. 7, pp. 4445-4469, 2017. Article

[105] J.S. Park, W.R. Holmes, S.H. Lee, H.N. Kim, D.H. Kim, M.K. Kwak, C.J. Wang, L. Edelstein-Keshet, and A. Levchenko, “A mechano-chemical feedback underlies co-existence of qualitatively distinct cell polarity patterns within diverse cell populations,” Proceedings of the National Academy of Sciences USA, vol. 114, pp. E5750-E5759, 2017. Article

[104] A. Smith, H. Yoo, H. Yi, E.H. Ahn, J. Lee, G. Shao, E. Nagornyak, M. Laflamme, C.E. Murry, and D.H. Kim, “Micro- and nano-patterned conductive graphene-PEG hybrid scaffolds for cardiac tissue engineering,” Chemical Communications, vol. 53, pp.7412-7415, 2017. Article (2017 Emerging Investigators Special Issue)

[103] A. Ray, O. Lee, Z. Win, R.M. Edwards, P.W. Alford, D.H. Kim, and P.P. Provenzano, “Anisotropic forces from spatially constrained focal adhesions mediate contact guidance directed cell migration,” Nature Communications, vol. 8, 14923, 2017. Article

[102] J. Long, H. Kim, D. Kim, J.B. Lee, and D.H. Kim, “A biomaterials approach to cell reprogramming and differentiation,” Journal of Materials Chemistry B, vol. 5, pp. 2375-2389, 2017. Article (invited)

[101] N. Penland, E. Choi, M. Perla, J. Park, and D.H. Kim, “Facile fabrication of tissue-engineered constructs using nanopatterned cell sheets and magnetic levitation,” Nanotechnology, vol. 28, 075103, 2017. Article (highlighted in

[100] A.S.T. Smith, J. Macadangdang, W. Leung, M.A. Laflamme, and D.H. Kim, “Human iPSC-derived cardiomyocytes and tissue engineering strategies for disease modeling and drug screening,” Biotechnology Advances, vol. 35, pp. 77-94, 2017 Article

[99] K. Uto, J. Tsui, C. DeForest#, and D.H. Kim#, “Dynamically tunable cell culture platforms for tissue engineering and mechanobiology,” Progress in Polymer Science, vol. 65, pp. 53-82, 2017. Article

[+] 2016

[98] K.H. Nam, P. Kim, D.K. Wood, S. Kwon, P.P. Provenzano#, and D.H. Kim#, “Multiscale cues drive collective cell migration,” Scientific Reports, vol. 6, 29749, 2016. Article

[97] C.L. Smith, O. Kilic, P. Schiapparelli, D.H. Kim, N. Sedora-Roman, H. Guerrero-Cazares, S. Gupta, T. O’Donnell, K. Chaichana, F. Rodriguez, S. Abbadi, A. Quiñones‐Hinojosa, and A. Levchenko, “Migration phenotype of brain cancer cells predicts patient outcomes,” Cell Reports, vol. 15, pp. 2616-2624, 2016. Article (highlighted in ScienceDaily)

[96] A. Stempien-Otero, D.H. Kim, and J. Davis, “Molecular networks underlying myofibroblast fate and fibrosis,” Journal of Molecular and Cellular Cardiology, vol. 97, pp. 153-161, 2016. Article

[95] J.M. Pioner, A.W. Racca, J. Klaiman, K.C. Yang, X. Guan, L. Pabon, V. Muskheli, R. Zaunbrecher, J. Macadangdang, M.Y. Yeong, D.L. Mack, M.K. Childers, D.H. Kim, C. Tesi, C. Poggesi, C.E. Murry, and M. Regnier, “Isolation and mechanical measurements of myofibrils from human induced pluripotent stem cell derived cardiomyocytes,” Stem Cell Reports, vol. 6, pp. 885-896, 2016. Article

[94] J. Park, D.H. Kim, H. Kim, C.J. Wang, M.K. Kwak, E. Hur, K.Y. Suh, S.S. An, and A. Levchenko, “Directed migration of cancer cells by the graded texture of the underlying matrix,” Nature Materials, vol. 15, pp. 792-801, 2016. Article

[93] A.S.T. Smith, J. Davis, K.S. Lee, D.L. Mack, and D.H. Kim, “Muscular dystrophy in a dish: engineered human skeletal muscle mimetics for disease modeling and drug discovery,” Drug Discovery Today, vol. 21, pp. 1387–1398, 2016. (invited) Article

[92] P.D. Tatman, E.G. Muhonen, S. Wickers, A.O. Gee, E.S. Kim, and D.H. Kim, “Self-assembled peptides for stem cell and tissue engineering”, Biomaterials Science, vol. 4, pp. 543-554, 2016. (Featured as an Inside Front Cover Article) Article

[91] P. Mengsteab, K. Uto, A.S.T. Smith, S. Frankel, E. Fisher, Z. Nawas, J. Macadangdang, M. Ebara, and D.H. Kim, “Spatiotemporal control of cardiac anisotropy using dynamic nanotopographic cues,” Biomaterials, vol. 86, pp. 1-10, 2016. Article

[90] D. Carson, M. Hnilova, X. Yang, C. Nemeth, A. Smith, J. Tsui, A. Jiao, M. Regnier, C. Murry, C. Tamerler, and D. H. Kim, “Nanotopography-induced structural anisotropy and sarcomere development in human induced pluripotent stem cell-derived cardiomyocytes,” ACS Applied Materials and Interfaces, vol. 8, pp. 21923-21932, 2016. Article

[89] C. Mandrycky, J. Wang, K. Kim, and D.H. Kim, “3D Bioprinting for engineering complex tissues,” Biotechnology Advances, vol. 34, pp. 422-434, 2016. Article

[88] W.H. Kong, D.K. Sung, H. Kim, J.A. Yang, N. Ieronimakis, K.S. Kim, J. Lee, D.H. Kim, S.H. Yun, and S.K. Hahn, “Self-adjuvanted hyaluronate – antigenic peptide conjugate for transdermal treatment of muscular dystrophy,” Biomaterials, vol. 81, pp. 93-103, 2016. Article

[87] H.J. Park, Y.B. Hong, Y.C. Choi, J. Lee, E.J. Kim, J.S. Lee, W.M. Mo, S.M. Ki, H.I. Kim, H.J. Kim, Y.S. Hyun, H.D. Hong, K.S. Nam, S.C. Jung, S.B. Kim, S.H. Kim, D.H. Kim, K.W. Oh, S. Kim, J. Yoo, J.E. Lee, K.W. Chung, and B.O. Choi, “ADSSL1 mutation relevant to autosomal recessive adolescent-onset distal myopathy,” Annals of Neurology, vol. 79, pp. 231-243, 2016. Article

[86] H.S. Yang, S.J. Yu, J. Tsui, J. Macadangdang, B. Lee, S.G. Im, and D.H. Kim, "Electroconductive nanopatterned substrates for enhanced myogenic differentiation and maturation," Advanced Healthcare Materials, vol. 5, pp. 137-145, 2016. (Featured as a Front Cover Article) Article

[+] 2015

[85] J. Macadangdang, X. Guan, A. Smith, R. Lucero, S. Czerniecki, M.K. Childers, D.L. Mack, and D.H. Kim, “Nanopatterned human iPSC-based model of a dystrophin-null cardiomyopathic phenotype,” Cellular and Molecular Bioengineering, vol. 8, pp. 320-332, 2015. (BMES-CMBE Young Innovator Special Issue) Article

[84] K. Uto, C. DeForest, and D.H. Kim, “Soft shape memory materials,” Biomaterials Nanoarchitectronics: Design of Functional Nanomaterials for Biomedical Applications, M. Ebara (Eds.), Elsevier, invited chapter, 2015.

[83] Y.S. Hyun, J. Lee, H.J. Kim, H. Koo, A.S.T. Smith, D.H. Kim, B.O. Choi, and K.W. Chung, “Compound heterozygous mutations in FGD4 cause Charcot-Marie-Tooth disease type 4 in two non-consanguineous Korean families,” Annals of Human Genetics, vol. 79, pp. 460-469, 2015. Article

[82] K.H. Nam, M. Perla, A. Smith, and D.H. Kim, “Bioengineered human heart and skeletal muscles on chips: methods and applications,” Frontiers in Biomedical Engineering: Convergence Technology, H. Jo, H.W. Jun, J. Shin, and S.H. Lee (Eds.), Springer-Verlag, invited chapter, pp. 199-208, 2015. Article

[81] P.D. Tatman, W. Gerull, S. Sweeney-Easter, J.I. Davis, A. Gee, and D.H. Kim, “Multiscale biofabrication of articular cartilage: bioinspired and biomimetic approaches,” Tissue Engineering, Part B. vol. 21, pp. 543-559, 2015. Article

[80] K. Uto, E. Fisher, H.N. Kim, C.H. Seo, and D.H. Kim, “Multi-scale topographical approaches for cell mechanobiology studies,” Integrative Mechanobiology: Micro and Nano Techniques in Cell Mechanobiology, Y. Sun, D.H. Kim, and C. Simmons (Eds.), Cambridge University Press, invited chapter, 2015.

[79] D. Huh and D.H. Kim, “Microengineered cell- and tissue-based assays for drug screening and toxicology applications,” Journal of Laboratory Automation, vol. 20, pp. 79-81, 2015. Article

[78] Kshitiz, J. Afzal, E.H. Ahn, Y. Suhail, R. Goyal, M. Hubbi, Q. Hussaini, D.E. Ellison, B. Nacev, D.H. Kim, J. Lee, S. Frankel, K. Gray, R. Bankoti, A. Chien, and A. Levchenko, “Control of the interface between heterotypic cell populations reveals the mechanism of intercellular transfer of signaling proteins,” Integrative Biology, vol. 7, pp.364-372, 2015. Article

[77] H. Jeon*, J.H. Tsui*, S.I. Jang*, J.H. Lee, K. Mun, S. Park, Y.C. Boo#, and D.H. Kim#, “Combined effects of substrate topography and stiffness on endothelial cytokines and chemokines secretion,” ACS Applied Materials and Interfaces, vol. 7, pp. 4525-4532, 2015. Article

[76] K.H. Nam*, A.Smith*, S. Lone, S. Kwon, and D.H. Kim#, "Biomimetic three-dimensional tissue models for advanced high-throughput drug screening," Journal of Laboratory Automation, vol. 20, pp. 201-215, 2015. Article

[75] K.H. Nam, M. Perla, A. Smith, and D.H. Kim, “Bioengineered human heart and skeletal muscles on chips: methods and applications,” Frontiers in Biomedical Engineering: Convergence Technology, H. Jo, H.W. Jun, J. Shin, and S.H. Lee (Eds.), Springer-Verlag, invited chapter, 2015.

[74] A.M. Mikheev, S.A. Mikheeva, A.D. Trister, M.J. Tokita, S.N. Emerson, C.A. Parada, D.E. Born, B. Carnemolla, S. Frankel, D.H. Kim, R.G. Oxford, Y. Kosai, K.R. Tozer-Fink, T.C. Manning, J.R. Silber, and R.C. Rostomily “Periostin is a novel therapeutic target that predicts and regulates glioma malignancy,” Neuro-Oncology, vol. 17, pp. 372-382, 2015. Article

[73] P. Mengsteab, J.Y. Kwon, H.T. Ryoon, B.M. Suk, K.T. Kyun, D.H. Kim, and S.J. Kim “Factors associated with the improvement of vocal fold movement: an analysis of LEMG and laryngeal CT parameters," Journal of Electromyography and Kinesiology, vol. 25(1), pp. 1-7, 2015. Article

[72] Kshitiz, J. Afzal, S. Y. Kim, and D.H. Kim#, "A nanotopography approach for studying the structure-function relationships of cells and tissues," Cell Adhesion and Migration, vol.9, pp. 300–307, 2015. (invited) Article

[+] 2014

[71] F. Pati, J. Jang, D.H. Ha, S.W. Kim, J.W. Rhie, J.H. Shim, D.H. Kim, and D.W. Cho, “Printing three dimensional tissue analogues with decellularized extracellular matrix bioink,” Nature Communications, vol.5, no.3935, 2014. Article

[70] A. Shapira, D.H. Kim, and T. Dvir, “Advanced micro and nanofabrication technologies in tissue engineering,” Biofabrication, vol.6, 020301, 2014. Article

[69] C. Nemeth, K. Janebodin, A. E. Yuan, J.E. Dennis, M. Reyes#, and D.H. Kim#, “Enhanced chondrogenic differentiation of dental pulp stem cells using nanopatterned PEG-GelMA-HA hydrogels,” Tissue Engineering vol. 20, pp. 2817-2829, 2014. Article

[68] J.E. Kim, S.M. Lee, S.H. Kim, P. Tatman, A.O. Gee, D.H. Kim, Y.M. Jung, and S.J. Kim, “The effect of self-assembled peptide-mesenchymal stem cell complex on the progression of osteoarthritis in a rat model,” International Journal of Nanomedicine, vol. 9, pp. 141-157, 2014. Article

[67] J. Antetomaso, A. Jiao, K. Gauthier-Bell, and D.H. Kim#, “Nanotopographically-defined in vitro cell culture models for stem cell and tissue engineering,” Handbook of Biomimetics and Bioinspiration, E. Jabbari, A. Khademhosseini, L.P. Lee, D.H. Kim, and A. Ghaemmaghami, (Eds.), invited chapter, Chapter.42, pp. 1149-1176, 2014. Article

[66] Kshitiz J. Afzal, D.H. Kim, and A. Levchenko, "Mechanotransduction via p190RhoGAP regulates a switch between cardiomyogenic and endothelial lineages in adult cardiac progenitors," Stem Cells, vol. 32, pp. 1999 – 2007, 2014. (invited) Article

[65] P. Kim, A. Yuan, K. Nam, A. Jiao, and D.H. Kim#, “Fabrication of poly(ethylene glycol):gelatin methacrylate composite nanostructures with tunable stiffness and degradation for vascular tissue engineering,” Biofabrication, vol.6, 024112, 2014. Article

[64] E.S. Kim, E.H. Ahn, T. Dvir, and D.H. Kim#, “Emerging nanotechnology approaches in tissue engineering and regenerative medicine,” International Journal of Nanomedicine, vol. 9, pp. 1-5, 2014. Article

[63] A. Jiao, N. Trosper, H.S. Yang, J.S. Kim, J. Tsui, S. Frankel, C.E. Murry, and D.H. Kim#, “A thermoresponsive nanofabricated substratum for the engineering of three-dimensional tissues with layer-by-layer architectural control,” ACS Nano, vol. 8, pp. 4430-4439, 2014. Article

[62] S. Chaterji, P. Kim, S.H. Choe, J.H. Tsui, A.B. Baker#, and D.H. Kim#, “Synergistic effects of matrix nanotopography and stiffness on vascular smooth muscle cell function,” Tissue Engineering Part A, vol. 20, pp. 2115-2126, 2014. Article

[61] J. Macadangdang, A. Jiao, D. Carson, H.J. Lee, J.A. Fugate, L.M. Pabon, M. Regnier, C. Murry, and D.H. Kim#, “Capillary force lithography for cardiac tissue engineering,” Journal of Visualized Experiments, e50039, 2014. Article

[60] E.H. Ahn, Y.H. Kim, Kshitiz, S. An, S.W. Lee, M. Kwak, K.Y. Suh, D.H. Kim#, and A. Levchenko#, “Spatial control of adult stem cell fate using nanotopographic cues,” Biomaterials, vol. 35, pp. 2401–2410, 2014. (highlighted in Faculty of 1000 Biology) Article

[59] N. Trosper, P. Kerscher, J. Macadangdang, D. Carson, E. Lipke, and D.H. Kim#, "Micro- and nanofabrication approaches to cardiac tissue engineering," Tissue and Organ Regeneration: Advances in Micro and Nano Technology, invited chapter, Chapter. 21, pp.725-754, 2014. Article

[58] H.S. Yang, N. Ieronimakis, J. Tsui, H.N. Kim, K.Y. Suh, M. Reyes#, and D.H. Kim#, “Nanopatterned muscle cell patches for enhanced myogenesis and dystrophin expression in a mouse model of muscular dystrophy,” Biomaterials, vol. 35, pp. 1478-1486, 2014. Article

[57] A. Blakney, J. Antetomaso W. Leung, and D.H. Kim#, “Extracellular matrix in vivo: components and behavior of cells on them,” Stem Cell NanoEngineering, H. Baharvand and N. Aghdami, invited chapter, Chapter. 3, 2014. Article

[+] 2013

[56] J.H. Kim, H.N. Kim, K.T. Lim, Y. Kim, S. Hoon, S. H. Park, H. J. Lim, D.H. Kim, P.H. Choung, Y.H. Choung, K.Y. Suh, and J.H. Chung, "Designing nanotopographical density of extracellular matrix for controlled morphology and function of human mesencymal stem cells," Scientific Reports, vol. 3, pp. 3552, 2013. Article PDF

[55] J. Tsui, W. H. Lee, S. Pun, J. K. Kim#, and D.H. Kim#, "Microfluidics-assisted drug carrier production and drug screening," Advanced Drug Delivery Review, vol. 65, pp.1575-1588, 2013. Article

[54] E.S. Kim, E.H. Ahn, E.H. Chung, and D.H. Kim#, “Recent advances in nanobiotechnology and high-throughput molecular techniques for systems biomedicine,“ Molecules and Cells, vol. 36, pp. 477-484, 2013. (invited) Article

[53] S.H. Park, M.S. Kim, D. Lee, Y.W. Choi, D.H. Kim#, and K.Y. Suh#, “Hybrid microfabrication of nanofiber-based sheets and rods for tissue engineering applications,” Journal of Laboratory Automation, vol. 18, pp. 494-503, 2013. (# corresponding authors)Article

[52] B. Lee, A. Jiao, S.J. Yu, J.B. You, D.H. Kim#, and S.G. Im#, “Initiated chemical vapor deposition of thermoresponsive poly(N-vinylcaprolactam) thin films for cell sheet engineering,” Acta Biomaterialia, vol. 9, pp. 7691–7698, 2013. ( # corresponding authors) Article

[51] J. H. Kim, K. S. Choi, Y. Kim, K.-T. Lim, H. Seonwoo, Y. Park, D.H. Kim, P.H. Choung, C.-S. Cho, S.Y. Kim, Y.H. Choung, and J. H. Chung, "Bioactive effects of graphene oxide cell culture substratum on structure and function of human adipose-derived stem cells," Journal of Biomedical Materials Research: Part A, vol. 101, pp. 3520–3530, 2013. (Featured as a Cover Article) Article

[50] R. Singh, E.S. Yoon, K.Y. Suh, and D.H. Kim, “Biomimetic surfaces for tribological applications in micro/nano-devices,” Nano-Tribology and Materials Issues in MEMS, S.S. Kumar, N. Satyanarayana, S.C. Lim (Eds.), Springer-Verlag, invited chapter, 2011.pp.147-162, 2013. Article

[49] M. E. Hubbi, Kshitiz, D.M. Gilkes, S. Rey, C. C. Wong, W. Luo, D.H. Kim, C. V. Dang, A. Levchenko, and G. Semenza, “A non-transcriptional role for HIF-1α as a direct inhibitor of DNA replication,” Science Signaling, vol. 6, pp. ra10, 2013. (Featured as a Cover Article; Highlighted in Science)Article; Podcast

[48] Y. Suhail, Kshitiz, J. Lee, M. Walker, D.H. Kim, M.D. Brennan, J. Bader, and A. Levchenko, “Modeling intercellular transfer of biomolecules through tunneling nanotubes,” Bulletin of Mathematical Biology, vol. 75, pp. 1400-1416, 2013. Article

[47] H. N. Kim, A. Jiao, N.S. Hwang, M.S. Kim, D.H. Kang, D.H. Kim, and K. Suh, "Nanotopography-guided tissue engineering and regenerative medicine" Advanced Drug Delivery Review vol. 64, pp. 536-558, 2013. (Featured as a Cover Article) Article

[+] 2012

[46] D.H. Kim, Kshitiz, R. R. Smith, P. Kim, E. H. Ahn, H.N. Kim, E Marban, K.Y. Suh, and A. Levchenko, "Nanopatterned cardiac cell patches promote stem cell niche formation and myocardial regeneration" Integrative Biology, Vol. 4, pp. 1019-1033, 2012 (Featured as a Cover Article) Article

[45] Kshitiz, J.S. Park, P. Kim, W. Helen, A.J. Engler, A. Levchenko, and D.H. Kim#, “Control of stem cell fate and function by engineering physical microenvironments” Integrative Biology, vol. 9, pp. 1008-1018, 2012. Article

[44] Kshitiz, M.E. Hubbi, E.H. Ahn, J. Downey, D.H. Kim, S. Rey, J. Afzal, A. Kundo, G.L. Semenza, R. M. Abraham, and A. Levchenko, “Matrix rigidity controls endothelial differentiation and morphogenesis of cardiac precursors,” Science Signaling vol. 5, Issue. 227, ra41, 2012. (Featured as a Cover Article; also featured in "The matter of the heart" Science 336 (6088):1483-84 (2012) and the JHU press release) Article

[43] H. N. Kim, D.H. Kang, M.S. Kim, A. Jiao, D.H. Kim, and K. Suh, "Patterning methods for polymers in cell and tissue engineering," Annals of Biomedical Engineering Vol. 40 No. 6, 1339-1355, 2012. (Award for Most Downloaded and Most Cited Review Article in 2012) Article

[42] J. Kim*, D.H. Kim*, K. T. Lim, H. S. Woo, S. H. Park, Y.R. Kim, Y. Kim, Y.H. Choung, P.-H. Choung, and J. H. Chung, "Charged nanomatrices as efficient platforms for modulating cell adhesion and shape," Tissue Engineering Part C: Methods vol. 18, pp. 913-923 (Featured as a Cover Article) Article

[41] T. Garzon-Muvdi, P. Schiapparelli, C. Rhys, H. Guerrero-Cazares, C. Smith, D.H. Kim, L. Kone, H. Farber, D.Y. Lee, S.S. An, A. Levchenko*, A. Quiñones-Hinojosa* "Regulation of brain tumor dispersal by NKCC1 through a novel role in focal adhesion regulation," PLoS Biology, Vol. 10, Issue. 5, e1001320, 2012. Article

[40] D.H. Kim#, P. Provenzano, C.L. Smith, and A. Levchenko#, “Matrix nanotopography as a regulator of cell function,” Journal of Cell Biology vol. 197 no. 3 pp. 351-360, 2012.( # corresponding authors) Article

[39] J.S. Park, H.N. Kim, D.H. Kim, A. Levchenko, and K.Y. Suh, “Quantitative analysis of the combined effect of substrate rigidity and topographic guidance on cell morphology,” IEEE Nanobioscience Vol. 11, pp. 28-36, 2012. Article

[+] 2011

[38] K. Gupta, D.H. Kim, D. Beebe, and A. Levchenko, “Micro and nanoengineering for stem cell biology: the promise with a caution,” Trends in Biotechnology, Vol. 29, pp.399-408, 2011. (Selected as Top 25 Hottest Articles) Article

[37] J. Kim, I. Hwang, D. Britain, T.D. Chung, Y. Sun, and D.H. Kim#, "Microfluidic approaches for gene delivery and gene therapy," Lab on a Chip, vol. 11, pp. 3941 - 3948, 2011. Article

[36] E. Hur*, I.H. Yang*, D.H. Kim*, J. Byun, W.-L. Xu, S. Jilafu, R. Cheong, A. Levchenko, N. Thakor, and F. Zhou, “Engineering neuronal growth cone to promote axon regeneration over inhibitory molecules,” Proceedings of the National Academy of Sciences USA, vol. 108, pp. 5057-5062, 2011. ( *Equal contribution). Article

[35] D.H. Kim and Y. Sun, “Micro- and nanoengineered tools as emerging platforms for cell mechanobiology,” IET Micro and Nano Letters, vol. 6, pp. 289, Editorial, 2011.

[+] 2010~2003 (Before Tenure-Track Appointment)

[34] D.H. Kim, H.J. Lee, Y.K. Lee, J.M. Nam, and A. Levchenko, "Biomimetic nanopatterns as enabling tools for analysis and control of live cells," Advanced Materials, vol. 22, pp.4551-4566, 2010. Pubmed, Hubmed

[33] K. Gupta*, D.H. Kim*, D. Ellison, C. Smith, A. Kundu, K.Y. Suh, J. Tuan, and A. Levchenko, “Lab-on-a-chip devices as an emerging platform for stem cell biology,” Lab on a Chip, vol. 10, pp.2019-2031, 2010. (*Equal contribution) Pubmed, Hubmed (Selected as one of the ten most accessed Lab on a Chip articles in August)

[32] K.J. Chang, D.H. Kim, S.M. Kim, A. Levchenko, and K.Y. Suh, “Micropatterned polymer structures for cell and tissue engineering,” Biological Responsive Hybrid Biomaterials, E. Jabbari and A. Khademhosseini (Eds.), Artech House Publishers, invited chapter, pp. 101-120, 2010. Article

[31] M.H. You, M.K. Kwak, D.H. Kim, K. Kim, A. Levchenko, D.Y. Kim, and K.Y. Suh, “Synergistically enhanced osteogenic differentiation of human mesenchymal stem cells by culture on nanostructured surfaces with induction media,” Biomacromolecules, vol. 11, pp.1856-1862, 2010. Pubmed, Hubmed

[30] K. Gupta, D.H. Kim#, D. Allison, C. Smith, and A. Levchenko#, “Using lab-on-a-chip technologies for stem cell biology,” Stem Cells and Regenerative Medicine, K. Appasani (Eds.), Springer Science (Humana) Press, invited chapter, pp. 483-498, 2010. (# corresponding authors)Article

[29] J. Park*, D.H. Kim*, G. Kim, Y.H. Kim, E. Choi, and A. Levchenko, “Simple haptotactic gradient generation within a triangular microfluidic channel,” Lab on a Chip, vol. 10, pp.2130-2138, 2010. (*Equal contribution) Pubmed, Article

[28] D.H. Kim, E. Lipke, P. Kim, R. Cheong, S. Edmonds, M. Delannoy, K.Y. Suh, L.Tung, and A. Levchenko, "Nanoscale cues regulate the structure and function of macroscopic cardiac tissue constructs," Proceedings of National Academy of Sciences USA, vol.107, pp. 565-570, 2010. Pubmed, Hubmed (Highlighted in the National Institute of Biomedical Imaging and Bioengineering)

[27] D.H. Kim, P. Wong, J.Y. Park, A. Levchenko, and Y. Sun#, "Microengineered platforms for cell mechanobiology," Annual Review of Biomedical Engineering, vol. 11, pp.203-233, 2009. (# denotes corresponding authors) Pubmed

[26] D.H. Kim, C. Seo, K. Han, K. Kwon, A. Levchenko and K.Y. Suh, "Guided cell migration on microtextured substrates with variable local density and anisotropy," Advanced Functional Materials, vol.19, pp.1579-1586, 2009. (Featured as a Frontispiece) Pubmed, Hubmed

[25] D.H. Kim, K. Han, K. Gupta, K. Kwon, K.Y. Suh, and A. Levchenko, "Mechanosensitivity of fibroblast cell shape and movement to anisotropic substratum topography gradients," Biomaterials, vol. 30, pp. 5433-5444, 2009. Pubmed, Hubmed

[24] J. Kim, M. Junkin, D.H. Kim, S.L. Kwon, Y.S. Shin, P. K. Wong, and B. K. Gale, "Applications, techniques, and microfluidic interfacing for nanoscale biosensing," Microfluidics and Nanofluidics, vol. 7, pp. 149-167, 2009.

[23] D.H. Kim, A. Levchenko, and K.Y. Suh, “Engineered surface nanotopography for controlling cell-substrate interactions,” Micro- and Nanoengineering of the Cell Microenvironment: Technologies and Applications, A. Khademhosseini, J. Borenstein, S. Takayama, and M. Toner (Eds.), Artech House Publishers, invited chapter, pp. 185-208, 2008. Article

[22] D.H. Kim, J.Y. Park, M.K. Kim, and K.S. Hong, "AFM-based identification of the dynamic properties of globular proteins: simulation study," Journal of Mechanical Science and Technology, vol. 22, no.11, pp. 2203-2212, 2008.

[21] Y. Sun, D.H. Kim, and A. Hashemi, “Biological cell sorting automation,” Life Science Automation: Fundamentals and Applications, M.J. Zhang, B.J. Nelson and R.A. Felder (Eds.), Artech House Publishers, invited chapter, pp. 411-434, 2007. Article

[20] D.H. Kim, J.Y. Park, K.Y. Suh, P. Kim, S.K. Choi. S.C. Ryu, S.H. Park, S.H. Lee and B. Kim, "Fabrication of patterned micromuscles with high activity for powering biohybrid microdevices," Sensors and Actuators B, vol. 117, pp.391-400, 2006.

[19] K.Y. Suh, H.E. Jeong, D.H. Kim, A.R. Singh, and E.S. Yoon, "Capillarity-assisted fabrication of nanostructures using less permeable mold for nanotribological applications," Journal of Applied Physics, vol.100, 2006.

[18] S. Park, S. Ryu, S. Ryu, D.H. Kim, and B. Kim, “Contractile force measurements of cardiac myocytes using a micro-manipulation system,” Journal of Mechanical Science and Technology, vol.20, no.5, pp.668-674, 2006.

[17] D.H. Kim, P. Kim, I.S. Song, J.M. Cha, S.H. Lee, B. Kim, and K.Y. Suh, "Guided three-dimensional growth of functional cardiomyocytes on polyethylene glycol nanostructures," Langmuir, vol.22, no.12, pp.5419-5426, 2006. > Pubmed, Hubmed

[16] E.S. Yoon, R.A. Singh, H.S. Kong, B. Kim, D.H. Kim, H.E. Jeong, and K.Y. Suh, “Tribological properties of bio-mimetic nano-patterned polymeric surfaces on silicon wafer,” Tribology Letters, vol.21, pp.31-37, 034303, 2006. (the Society of Tribologists and Lubrication Engineers, Surface Engineering Best Paper Award)

[15] D.H. Kim, C.N. Hwang, Y. Sun, B. Kim, S.H. Lee, and B. Nelson, "Mechanical analysis of chorion softening in pre-hatching stages of zebrafish embryos," IEEE Transactions on Nanobioscience, vol.5, no.2, pp.89-94, 2006. Pubmed, Hubmed

[14] D.H. Kim, K.S. Hong, and K.S. Yi, “Driving load estimation with the use of estimated turbine torque,” JSME International Journal Series C, vol.49, pp.163-171, 2006.

[13] B. Kim, H.J. Kang, D.H. Kim, and J.O. Park, “A flexible microassembly system based on hybrid manipulation scheme for manufacturing photonics components," International Journal of Advanced Manufacturing Technology, vol.28, pp.379-386, 2006.

[12] J.Y. Park, S.M. Kim, D.H. Kim, B. Kim, S.J. Kwon, J.O. Park, and K.I. Lee, "Identification and control of a sensorized microgripper for micromanipulation," IEEE/ASME Transactions on Mechatronics, vol.10, no.5, pp.601-606, 2005.

[11] P.N. Kim, D.H. Kim, B. Kim, S.K. Choi, S.H. Lee, A. Khademhosseini, R. Langer, and K.Y. Suh, "Fabrication of nanostructures of poly(ethylene glycol) for application to protein adsorption and cell adhesion," Nanotechnology, vol.16, pp.2420-2426, 2005.

[10] B. Kim, D.H. Kim, J.H. Jung, and J.O. Park, "A biomimetic undulatory tadpole robot using ionic polymer-metal composite actuators," Smart Materials and Structures, vol. 14, pp.1579-1585, 2005.

[9] D.H. Kim, M.G. Lee, B. Kim, and Y. Sun, "A superelastic alloy microgripper with embedded electromagnetic actuators and piezoelectric sensors: a numerical and experimental study," Smart Materials and Structures, vol.14, pp.1265-1272, 2005.

[8] D.H. Kim, Y. Sun, S. Yun, S.H. Lee, and B. Kim, "Investigating chorion softening of zebrafish embryos with a microrobotic force sensing system," Journal of Biomechanics, vol.38, no.6, pp.1359-1363, 2005. Pubmed, Hubmed

[7] A. Haake, A. Neild, D.H. Kim, J.E. Ihm, Y. Sun, J. Dual, and B.K. Ju, "Manipulation of cells using an ultrasonic pressure field," Ultrasound in Medicine and Biology, vol.31, no.6, pp.857-864, 2005. Pubmed, Hubmed

[6] D.H. Kim, B. Kim, B.K. Ju, and J.O. Park, “State of the art in nano-biomanipulation technologies,” Journal of Control, Automation and Systems Engineering, vol.11, no.4, pp.353-362, 2005.

[5] D.H. Kim, B. Kim, and H.J. Kang, "Development of a piezoelectric polymer-based sensorized microgripper for micromanipulation and microassembly", Microsystem Technologies, vol.10, no.4, pp.275-280, 2004.

[4] D.H. Kim, B. Kim, and J.O. Park, “Implementation of a piezoresistive MEMS cantilever for nanoscale force measurements in micro/nano robotic applications,” Journal of Mechanical Science and Technology, vol.18, no.5, 789-797, 2004.

[3] D.H. Kim, K.-J. Yang, K.S. Hong, J.O. Hahn, and K.I. Lee, “Smooth shift control of automatic transmissions using a robust adaptive scheme with intelligent supervision,“ International Journal of Vehicle Design, vol.32, no.3/4, pp.250-272, 2003.

[2] J.Y. Park, D.H. Kim, T.S. Kim, B. Kim, and K.I. Lee “Design and performance evaluation of a 3-DOF mobile microrobot for micro manipulation,” Journal of Mechanical Science and Technology, vol.17, no.9, pp.1268-1275, 2003.

[1] D.H. Kim, B. Kim, S. Youn, and H.J. Kang, “Cellular force sensing for force feedback-based biological cell injection,” Transactions of the KSME, A, vol.27, no.12, pp.2079-2084, 2003.


Y. Sun, C. Simmons, and D.H. Kim, Editors, “Integrative Mechanobiology: Micro and Nano Techniques in Cell Mechanobiology,” Cambridge University Press, 2015. (scheduled)

E. Jabbari, D.H. Kim, L.P. Lee, A. Ghaemmaghami, and A. Khademhosseini, Editors, “Handbook of Biomimetics and Bioinspiration,” World Scientific Publishers, 2014 Article