Julius B. Lucks/Projects/Biocomputing

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Ideas

  • WRITE DOWN THE REQUIREMENTS OF A CELLULAR COMPUTATIONAL SYSTEM
    • more than one function inside a cell
    • controlled order of program execution
    • ...

BioComputing References

John Reif

  1. Aperiodic self-assembly of DNA [1].

JJ Collins

  1. Programmable cells: interfacing natural and engineered gene networks [2].

Simpson, Sayler, Fleming, Applegate

  1. Whole-cell biocomputing [3].

Allen Hjelmfelt, John Ross

  1. Chemical Implementation of neural networks and Turing machines [4]
  2. Chemical Implementation of finite-state machines [5]

References

  1. Mao C, LaBean TH, Relf JH, and Seeman NC. Logical computation using algorithmic self-assembly of DNA triple-crossover molecules. Nature. 2000 Sep 28;407(6803):493-6. DOI:10.1038/35035038 | PubMed ID:11028996 | HubMed [Mao-Nature-407-2000]
    Notes
  2. Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ. Programmable cells: interfacing natural and engineered gene networks. Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8414-9. DOI:10.1073/pnas.0402940101 | PubMed ID:15159530 | HubMed [Kobayashi-PNAS-101-2004]
    Notes
  3. Simpson ML, Sayler GS, Fleming JT, and Applegate B. Whole-cell biocomputing. Trends Biotechnol. 2001 Aug;19(8):317-23. PubMed ID:11451474 | HubMed [Simpson-TrendsBiotechnol-19-2001]
    doi:10.1016/S0167-7799(01)01691-2

    Notes

  4. Hjelmfelt A, Weinberger ED, and Ross J. Chemical implementation of neural networks and Turing machines. Proc Natl Acad Sci U S A. 1991 Dec 15;88(24):10983-7. PubMed ID:1763012 | HubMed [Allen-PNAS-88-1991]
    Notes
  5. Hjelmfelt A, Weinberger ED, and Ross J. Chemical implementation of finite-state machines. Proc Natl Acad Sci U S A. 1992 Jan 1;89(1):383-7. PubMed ID:11607249 | HubMed [Allen-PNAS-89-1992]
    Notes
All Medline abstracts: PubMed | HubMed