Julius B. Lucks/Projects/Biocomputing

Ideas

• WRITE DOWN THE REQUIREMENTS OF A CELLULAR COMPUTATIONAL SYSTEM
  • more than one function inside a cell
  • controlled order of program execution
  • ...

BioComputing References

John Reif

1. Aperiodic self-assembly of DNA [1].

JJ Collins

1. Programmable cells: interfacing natural and engineered gene networks [2].

Simpson, Sayler, Fleming, Applegate

1. Whole-cell biocomputing [3].

Allen Hjelmfelt, John Ross

1. Chemical Implementation of neural networks and Turing machines [4]
2. Chemical Implementation of finite-state machines [5]

References

1. Mao C, LaBean TH, Relf JH, and Seeman NC. Logical computation using algorithmic self-assembly of DNA triple-crossover molecules. Nature. 2000 Sep 28;407(6803):493-6. DOI:10.1038/35035038 |

   Notes

2. Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ. Programmable cells: interfacing natural and engineered gene networks. Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8414-9. DOI:10.1073/pnas.0402940101 |

   Notes

3. Simpson ML, Sayler GS, Fleming JT, and Applegate B. Whole-cell biocomputing. Trends Biotechnol. 2001 Aug;19(8):317-23. DOI:10.1016/s0167-7799(01)01691-2 |

   doi:10.1016/S0167-7799(01)01691-2 Notes

4. Hjelmfelt A, Weinberger ED, and Ross J. Chemical implementation of neural networks and Turing machines. Proc Natl Acad Sci U S A. 1991 Dec 15;88(24):10983-7. DOI:10.1073/pnas.88.24.10983 |

   Notes

5. Hjelmfelt A, Weinberger ED, and Ross J. Chemical implementation of finite-state machines. Proc Natl Acad Sci U S A. 1992 Jan 1;89(1):383-7. DOI:10.1073/pnas.89.1.383 |

   Notes