Julius B. Lucks/Bibliography

From OpenWetWare
Jump to: navigation, search
  1. Hjelmfelt A, Weinberger ED, and Ross J. Chemical implementation of neural networks and Turing machines. Proc Natl Acad Sci U S A. 1991 Dec 15;88(24):10983-7. PubMed ID:1763012 | HubMed [Allen-PNAS-88-1991]
    Notes
  2. Hjelmfelt A, Weinberger ED, and Ross J. Chemical implementation of finite-state machines. Proc Natl Acad Sci U S A. 1992 Jan 1;89(1):383-7. PubMed ID:11607249 | HubMed [Allen-PNAS-89-1992]
    Notes
  3. Forterre P. Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain. Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3669-74. DOI:10.1073/pnas.0510333103 | PubMed ID:16505372 | HubMed [Forterre-PNAS-2006]
    Notes
  4. Forterre P. The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells. Biochimie. 2005 Sep-Oct;87(9-10):793-803. DOI:10.1016/j.biochi.2005.03.015 | PubMed ID:16164990 | HubMed [Forterre-Biochimie-2005]
    Notes
  5. Ham TS, Lee SK, Keasling JD, and Arkin AP. A tightly regulated inducible expression system utilizing the fim inversion recombination switch. Biotechnol Bioeng. 2006 May 5;94(1):1-4. DOI:10.1002/bit.20916 | PubMed ID:16534780 | HubMed [Ham-BiotechBioengineering-94-2006]
    Notes
  6. Podhajska AJ, Hasan N, and Szybalski W. Control of cloned gene expression by promoter inversion in vivo: construction of the heat-pulse-activated att-nutL-p-att-N module. Gene. 1985;40(1):163-8. PubMed ID:3005124 | HubMed [Podhajska-Gene-40-1985]
    Notes
  7. Sanger F, Coulson AR, Hong GF, Hill DF, and Petersen GB. Nucleotide sequence of bacteriophage lambda DNA. J Mol Biol. 1982 Dec 25;162(4):729-73. PubMed ID:6221115 | HubMed [Sanger-JMolBiol-1982]
    Notes
  8. Tan C, Song H, Niemi J, and You L. A synthetic biology challenge: making cells compute. Mol Biosyst. 2007 May;3(5):343-53. DOI:10.1039/b618473c | PubMed ID:17460793 | HubMed [Tan-MolBiosyst-2007]
    Notes
  9. Zeldovich KB, Berezovsky IN, and Shakhnovich EI. Protein and DNA sequence determinants of thermophilic adaptation. PLoS Comput Biol. 2007 Jan 12;3(1):e5. DOI:10.1371/journal.pcbi.0030005 | PubMed ID:17222055 | HubMed [Zeldovich-PLoSCompBio-2007]
    Notes
  10. Drummond DA, Bloom JD, Adami C, Wilke CO, and Arnold FH. Why highly expressed proteins evolve slowly. Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14338-43. DOI:10.1073/pnas.0504070102 | PubMed ID:16176987 | HubMed [Drummond-PNAS-2005]
  11. Drummond DA, Raval A, and Wilke CO. A single determinant dominates the rate of yeast protein evolution. Mol Biol Evol. 2006 Feb;23(2):327-37. DOI:10.1093/molbev/msj038 | PubMed ID:16237209 | HubMed [Drummond-MBE-2006]
  12. Plotkin JB and Fraser HB. Assessing the determinants of evolutionary rates in the presence of noise. Mol Biol Evol. 2007 May;24(5):1113-21. DOI:10.1093/molbev/msm044 | PubMed ID:17347158 | HubMed [Plotkin-Fraser-MBE-2007]
  13. von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, and Bork P. Comparative assessment of large-scale data sets of protein-protein interactions. Nature. 2002 May 23;417(6887):399-403. DOI:10.1038/nature750 | PubMed ID:12000970 | HubMed [vonMering-Nature-2002]
  14. Drake, J. W. (1970) The Molecular Basis of Mutation. Holden-Day, San Francisco [Drake-Book-1970]
    Notes
  15. edited by Richard Calendar; with editorial assistance by Stephen T. Abedon. The bacteriophages. Oxford; Oxford University Press, 2006. ISBN:9780195148503 [Calendar-Book-2004]
  16. JACOB F, FUERST R, and WOLLMAN EL. [Defective lysogenic bacteria. II. Physiological types resulting from prophage mutations]. Ann Inst Pasteur (Paris). 1957 Dec;93(6):724-53. PubMed ID:13498456 | HubMed [Jacob-AnnInstPasteur-1957]
  17. Mao C, LaBean TH, Relf JH, and Seeman NC. Logical computation using algorithmic self-assembly of DNA triple-crossover molecules. Nature. 2000 Sep 28;407(6803):493-6. DOI:10.1038/35035038 | PubMed ID:11028996 | HubMed [Mao-Nature-407-2000]
    Notes
  18. Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ. Programmable cells: interfacing natural and engineered gene networks. Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8414-9. DOI:10.1073/pnas.0402940101 | PubMed ID:15159530 | HubMed [Kobayashi-PNAS-101-2004]
    Notes
  19. Simpson ML, Sayler GS, Fleming JT, and Applegate B. Whole-cell biocomputing. Trends Biotechnol. 2001 Aug;19(8):317-23. PubMed ID:11451474 | HubMed [Simpson-TrendsBiotechnol-19-2001]
    doi:10.1016/S0167-7799(01)01691-2

    Notes

  20. Weiss R., Basu S., Hooshangi S., Kalmbach A., Karig D., Mehreja R., Netravali I. Genetic circuit building blocks for cellular computation, communications, and signal processing. PDF [Weiss-NatComput-2-2003]
    Notes
  21. Gottesman ME and Weisberg RA. Little lambda, who made thee?. Microbiol Mol Biol Rev. 2004 Dec;68(4):796-813. DOI:10.1128/MMBR.68.4.796-813.2004 | PubMed ID:15590784 | HubMed [Gottesman-MicrobiolMolBiolRev-68-2004]
    Notes
All Medline abstracts: PubMed | HubMed