Jimenez-gomez lab:Publications

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Institute Jean Pierre Bourgin
INRA - Versailles
Route de Saint Cyr
78026 Versailles Cedex
Tel: +33 1 30 83 33 16
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  • S Soyk, NA Müller, SJ Park, I Schmalenbach, Ke Jiang, Ryosuke Hayama, Lei Zhang, Joyce Van Eck, JM Jiménez-Gómez, Zachary B Lippman."Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato". Nature Genetics [link]

  • GU Balcke, S Bennewitz, N Bergau, B Athmer, A Henning, P Majovsky, JM Jiménez-Gómez, W Hoehenwarter, A Tissier. “Multiomics of tomato glandular trichomes reveals distinct features of central carbon metabolism supporting high productivity of specialized metabolites”. The Plant Cell [link]

  • E Magnani, JM Jiménez-Gómez, L Soubigou-Taconnat, L Lepiniec, E Fiume. “Profiling the onset of somatic embryogenesis in Arabidopsis” BMC Genomics, [link]

  • MC Costa, MA Artur, J Maia, E Jonkheer, M Derks, H Nijveen, B Williams, S Mundree, JM Jiménez-Gómez, T Hesselink, E Schijlen, W Ligterink, M Oliver, J Farrant and H Hilhorst. “A ‘footprint’ of desiccation tolerance in the genome of Xerophyta viscosa”. Nature Plants [link]

  • C Bazakos, M Hanemian, C Trontin, JM Jiménez-Gómez, O Loudet. “New Strategies and Tools in Quantitative Genetics: How to Go from the Phenotype to the Genotype”. Annual Review of Plant Biology [link]

  • MF Alvarez, M Angarita, MC Delgado, C Garcia, JM Jiménez-Gómez, C Gebhardt, T Mosquera. “Identification of novel associations of candidate genes with resistance to late blight in Solanum tuberosum Group Phureja” Frontiers in Plant Science [link]

  • EAR Serin, LB Snoek, H Nijveen, LAJ Willems, JM Jiménez-Gómez, HWM Hilhorst, W Ligterink. “Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 × Shahdara RIL Population” Frontiers in Plant Science [link].

  • A Ashoub, N Müller, JM Jiménez‐Gómez, W Brüggemann. “Prominent alterations of wild barley leaf transcriptome in response to individual and combined drought acclimation and heat shock conditions” Physiologia Plantarum [link].



  • NA Müller, CL Wijnen, A Srinivasan, M Ryngajllo, I Ofner, T Lin, A Ranjan, D West, JN Maloof, NR Sinha, S Huang, D Zamir, JM Jiménez-Gómez “Domestication selected for deceleration of the circadian clock in cultivated tomato”. Nature Genetics [link]

  • NA Müller, JM Jiménez-Gómez. “Analysis of Circadian Leaf Movements”. Environmental Responses in Plants: Methods and Protocols [link]

  • M Bar, A Israeli, M Levy, HB Gera, JM Jiménez-Gómez, S Kouril, P Tarkowski, and N Ori. “CLAUSA Is a MYB Transcription Factor That Promotes Leaf Differentiation by Attenuating Cytokinin Signaling”. The Plant Cell [link]

  • A Srinivasan, JM Jiménez-Gómez, F Fornara, W Soppe, V Brambilla. “Alternative splicing enhances transcriptome complexity in desiccating seeds”. J. Integr. Plant Biol. [link]

  • C Perea-Resa, C Carrasco-López, R Catalá, V Turečková, O Novak, W Zhang, LE Sieburth, JM Jiménez-Gómez and J Salinas. “The LSM1-7 complex controls plant adaptation to adverse environmental conditions by promoting selective mRNA decapping”. The Plant Cell [link]

  • T Mosquera, MF Alvarez, JM Jiménez-Gómez, MS Muktar, MJ Paulo, S Steinemann, J Li, A Draffehn, A Hofmann, J Lübeck, J Strahwald, E Tacke, HR Hofferbert, B Walkemeier, C Gebhardt. "Targeted and Untargeted Approaches Unravel Novel Candidate Genes and Diagnostic SNPs for Quantitative Resistance of the Potato (Solanum tuberosum L.) to Phytophthora infestans Causing the Late Blight Disease”. PLoS One [link]



  • I Schmalenbach, L Zhang, M Reymond, JM Jiménez-Gómez. “The relationship between flowering time and growth responses to drought in the Arabidopsis Landsberg erecta x Antwerp-1 population”. Frontiers in Plant Science [link]

  • A Bolger, F Scossa, ME Bolger, C Lanz, F Maumus, T Tohge, H Quesneville, S Alseekh, I Sørensen, G Lichenstein, EA Fich, M Conte, H Keller, K Schneeberger, R Schwacke, I Ofner, J Vrebalov, Y Xu, S Osorio, SA Aflitos, E Schijlen, JM Jiménez-Gómez, M Ryngajllo, S Kimura, R Kumar, D Koenig, LR Headland, JN Maloof, N Sinha, RCHJ van Ham, RK Lankhorst, L Mao, A Vogel, B Arsova, R Panstruga, Z Fei, JKC Rose, D Zamir, F Carrari, JJ Giovannoni, D Weigel, B Usadel, AR Fernie. "The genome of the stress-tolerant wild tomato species Solanum pennellii". Nature Genetics [link]

  • J Gloggnitzer, S Akimcheva, A Srinivasan, B Kusenda, N Riehs, H Stampfl, J Bautor, B Dekrout, C Jonak, JM Jiménez-Gómez, JE Parker, K Riha. "Nonsense-Mediated mRNA Decay Modulates Immune Receptor Levels to Regulate Plant Antibacterial Defense". Cell Host & Microbe [link]

  • I Schmalenbach, L Zhang, M Ryngajllo, JM Jiménez-Gómez. “Functional analysis of the Landsberg erecta allele of FRIGIDA”. BMC Plant Biology [link]

  • JM Jiménez-Gómez. “Network types and their application in natural variation studies in plants”. Current Opinion in Plant Biology [link]



  • DH Chitwood, R Kumar, LR Headland, A Ranjan, MF Covington, Y Ichihashi, D Fulop, JM Jiménez-Gómez, J Peng, JN Maloof and NR Sinha. "A Quantitative Genetic Basis for Leaf Morphology in a Set of Precisely Defined Tomato Introgression Lines". The Plant Cell [link]

  • D Koenig*, JM Jiménez-Gómez*, S Kimura, D Fulop, DH Chitwood, LR Headland, R Kumar, MF Covington, U Kumar Devisetty, AV Tat, T Tohge, A Bolger, K Schneeberger, S Ossowski, C Lanz, G Xiong, M Taylor-Teeples, SM Brady, M Pauly, D Weigel, B Usadel, AR Fernie, J Peng, NR Sinha and JN Maloof. “Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato”. PNAS [link]



  • M Sharlach, D Dahlbeck, L Liu, J Chiu, JM Jiménez-Gómez, S Kimura, D Koenig, JN Maloof, N Sinha, GV Minsavage, JB Jones, RE Stall, BJ Staskawicz. “Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716”. Theor Appl Genet [link]

  • DH Chitwood, LR Headland, DL Filiault, R Kumar, JM Jiménez-Gómez, AV Schrager, DS Park, J Peng, NR Sinha and JN Maloof. “Native environment modulates leaf size and response to simulated foliar shade across wild tomato species”. PLoS ONE [link]



  • JM Jiménez-Gómez, J Corwin, B Joseph, JN Maloof and DJ Kliebenstein. "Genomic Analysis of QTLs and Genes Altering Natural Variation in Stochastic Noise". PLoS Genetics [link]

  • R Kerwin, JM Jiménez-Gómez, SL Harmer, JN Maloof and DJ Kliebenstein. "Network Quantitative Trait Loci Mapping of Circadian Clock Outputs Identifies Metabolic Pathway-to-Clock Linkages in Arabidopsis". The Plant Cell [link]

  • JM Jiménez-Gómez. "Next generation quantitative genetics in plants". Frontiers in Plant Physiology [link]



  • JM Jiménez-Gómez, A Wallace and JN Maloof. "Network Analysis Identifies ELF3 as a QTL for the Shade Avoidance Response in Arabidopsis". PLoS Genetics [link]



  • JM Jimenez-Gomez and JM Maloof." Sequence diversity in three tomato species: SNPs, markers, and molecular evolution". BMC Plant Biology [link]

  • JM Jiménez-Gómez and JN Maloof. "Plant research accelerates along the (bio)informatics superhighway. Symposium on Plant Sensing, Response and Adaptation to the Environment". EMBO Reports [link]



  • JM Jiménez-Gómez C Alonso-Blanco, A Borja, G Anastasio, T Angosto, R Lozano and JM Martínez-Zapater. "Quantitative genetic analysis of flowering time in tomato". Génome [link]