IGEM:UNAM Genomics Mexico/2009/Notebook/Wifi coli/2010/09/28

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September 28th, 2010

Modeling

  • Currrently modeling is working on Simbiology modeling and Kappa modeling.


At this meeting we re-propose the rules in our systems, because experimental results are not finished.


Rules

  • Red receptor
    • Cph8* + Phot → Cph8
    • Cph8 → Cph8*
    • OmpR + Cph8* → OmpRP + Cph8*
    • OmpRP → OmpR
    • 3OmpRP + OmpCO ↔ OmpCOc.Act
    • OmpCOc.Act → pCI + OmpCO + 3OmpRP
    • pCI + sCI0 → sCIOc.Act
    • pCI → DEG
    • sCIOc.Act → sCI0 + pCI
    • sCI0 → mRNA + sCI0


  • Green Emission
    • mRNA → DEG
    • mRNA → LuxA + LuxB
    • LuxA → DEG
    • LuxB → DEG
    • LuxA + LuxB ↔ LuxAB
    • LuxAB + LuxY ↔ LuxABY
    • LuxAB + R14CHO → LuxAB + Photons475 + R+COOH
    • LuxABY + R14CHO → LuxABY + Photons540 + R+COOH
    • Myr. Ac. + LuxD → R-CO + LuxD
    • R-CO + LuxC → R-COOH + LuxC
    • R COOH + LuxE → R14CHO + LuxE

These rules can be changed by other rules if they are wrong.