September 28th, 2010
Modeling
- Currrently modeling is working on Simbiology modeling and Kappa modeling.
At this meeting we re-propose the rules in our systems, because experimental results are not finished.
Rules
- Red receptor
- Cph8* + Phot → Cph8
- Cph8 → Cph8*
- OmpR + Cph8* → OmpRP + Cph8*
- OmpRP → OmpR
- 3OmpRP + OmpCO ↔ OmpCOc.Act
- OmpCOc.Act → pCI + OmpCO + 3OmpRP
- pCI + sCI0 → sCIOc.Act
- pCI → DEG
- sCIOc.Act → sCI0 + pCI
- sCI0 → mRNA + sCI0
- Green Emission
- mRNA → DEG
- mRNA → LuxA + LuxB
- LuxA → DEG
- LuxB → DEG
- LuxA + LuxB ↔ LuxAB
- LuxAB + LuxY ↔ LuxABY
- LuxAB + R14CHO → LuxAB + Photons475 + R+COOH
- LuxABY + R14CHO → LuxABY + Photons540 + R+COOH
- Myr. Ac. + LuxD → R-CO + LuxD
- R-CO + LuxC → R-COOH + LuxC
- R COOH + LuxE → R14CHO + LuxE
These rules can be changed by other rules if they are wrong.
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