IGEM:UNAM Genomics Mexico/2009/Notebook/Wifi coli/2010/09/30

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September 30th

Here we have the rest of the rules for the model:

Rules

  • Green Receptor
    • CcaS + photon → CcaS*
    • CcaS* + CcaR ↔ CcaS* + CcaR*
    • CcaR* → CcaR
    • 2CcaR* + sCcaR ↔ sCcaR*
    • sCcaR* → mRNA + sCcaR + 2CcaS*
  • Blue Emission
    • mRNA → DEG
    • mRNA → LuxA + LuxB
    • LuxA → DEG
    • LuxB → DEG
    • LuxA + LuxB ↔ LuxAB
    • LuxAB + R14CHO → LuxAB + Photons475 + R-COOH
    • LumP + Photons475 → LumP + Photons490
    • Myr.Ac. + LuxD → R-CO + LuxD
    • R-CO + LuxC → R-COOH + LuxC
    • R-COOH + LuxE → R14CHO + LuxE
  • Blue Receptor (lovTAP)
    • lovTAP + Phot → lovTAP*
    • lovTAP* + lovTAP* ↔ 2-lovTAP*
    • 2-lovTAP* + TrpL0 ↔ TrpLOc
    • TrpL0 → pCI
    • pCI + sCI0 → sCIOc.Act
    • sCIOc.Act → sCI0 + pCI
    • pCI → DEG
    • sCI0 → mRNA
  • Red Emission
    • mRNA → DEG
    • mRNA → Luc
    • Luc → DEG
    • LucINA → DEG
    • LucINA ↔ LucINAext
    • Luc + LucINA → OxyLucINA + Luc + photon
    • OxyLucINA + LRE → 2cyano6 + LRE
    • 2cyano6 → L-LucINA
    • L-LucINA + Luc → Keto + Luc
    • 2Keto → L-LucINA+ LucINA