File:Gb feature fasta list

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Gb_feature_fasta_list(file size: 9 KB, MIME type: unknown/unknown)
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Based on Gene's genbank_parser script, this script uses BioPerl to find the CDS features in a list of genbank files. Features are written out in multifasta format as either proteins or genes. Entries can be named using feature metadata or simply numbered.

File history

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Date/TimeDimensionsUserComment
current11:10, 29 August 2007 (9 KB)John M. Eppley (talk | contribs)2 fixes: prefix gene names with LOCUS tag and added organism name to header line correctly get gene name info when using -n flag
14:05, 24 August 2007 (8 KB)John M. Eppley (talk | contribs)Based on Gene's genbank_parser script, this script uses BioPerl to find the CDS features in a list of genbank files. Features are written out in multifasta format as either proteins or genes. Entries can be named using feature metadata or simply numbered.
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