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Perl Scripts

gb_feature_fasta_list Input: a Genbank file. Output: a multi-fasta file of ORFs. This script requires BioPerl to be installed on your computer. download

Sliding_fasta_modified Input: a fasta or multi-fasta file. Output: a mutli-fasta file of tiled sequences across your input region, sliding-window style. User specifies window size and step size. download

Submitting fosmid sequences to Genbank Instructions for preparing your files for importing into Sequin, and a script for preparing the annotation data.

  • If you use this, and it works as expected, or if there are problems, please shoot me an email at jmaresca (at) mit (dot) edu. Thanks.