Chan:Bioinformatics Sites

Chan Lab

Department of Plant Biology, UC Davis and HHMI

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Arabidopsis tools: TAIR BLAST search TIGR Arabidopsis BLAST Search Salk Institute Genome Analysis Laboratory (SIGnaL) T-DNA Express Primer design for T-DNAs Dirk Inze GATEWAY vectors Arabidopsis genome databases: TAIR (The Arabidopsis Information Resource) TAIR Seqviewer AtEnsembl WeigelWorld Resources incl. AtGenExpress Todd Mockler expression tools Jacobsen/Ecker Arabidopsis Methylome Database Carrington Lab siRNA Database MPSS Small RNAs and Transcripts Yeast Genome Databases: S.pombe genome database S.cerevisiae genome database Bioinformatics: NCBI homepage BLAST at NCBI BLAST Plant Genomes SMART Protein Domains ClustalW at EBI Dialign multiple sequence alignment YOGY homolog search Inparanoid homolog search MEME motif finder Experimental: Current Protocols Primer3 Oligo Calculator REBase at NEB dCAPs Finder Chi-square calculator CODDLE for TILLING Forsburg lab S.pombe methods Literature: NCBI ISI Knowledge Google Scholar