BioControl:Week6

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Best of 2006-2007

Best of 2007-2008

Past Reading

Changes


Next meeting

  • Friday, 1/26 at 9am in 114 Steele

Topics

  • Bacterial Chemotaxis
    • Integral control
    • Biochemistry (Nate?)

Reading

  1. Yi TM, Huang Y, Simon MI, and Doyle J. Robust perfect adaptation in bacterial chemotaxis through integral feedback control. Proc Natl Acad Sci U S A. 2000 Apr 25;97(9):4649-53. PubMed ID:10781070 | HubMed [Yi]

Discussion

Further Reading

New papers

  1. Mittal N, Budrene EO, Brenner MP, and Van Oudenaarden A. Motility of Escherichia coli cells in clusters formed by chemotactic aggregation. Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13259-63. DOI:10.1073/pnas.2233626100 | PubMed ID:14597724 | HubMed [Ozbudak]
  2. Rao CV, Kirby JR, and Arkin AP. Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis. PLoS Biol. 2004 Feb;2(2):E49. DOI:10.1371/journal.pbio.0020049 | PubMed ID:14966542 | HubMed [Rao1]
  3. Rao CV, Kirby JR, and Arkin AP. Phosphatase localization in bacterial chemotaxis: divergent mechanisms, convergent principles. Phys Biol. 2005 Jul 14;2(3):148-58. DOI:10.1088/1478-3975/2/3/002 | PubMed ID:16224120 | HubMed [Rao2]
All Medline abstracts: PubMed | HubMed

Last week's selections

  1. Barkai N and Leibler S. Robustness in simple biochemical networks. Nature. 1997 Jun 26;387(6636):913-7. DOI:10.1038/43199 | PubMed ID:9202124 | HubMed [Barkai]
  2. Keymer JE, Endres RG, Skoge M, Meir Y, and Wingreen NS. Chemosensing in Escherichia coli: two regimes of two-state receptors. Proc Natl Acad Sci U S A. 2006 Feb 7;103(6):1786-91. DOI:10.1073/pnas.0507438103 | PubMed ID:16446460 | HubMed [Keymer]
All Medline abstracts: PubMed | HubMed

Last week's further reading

  1. Alon U, Surette MG, Barkai N, and Leibler S. Robustness in bacterial chemotaxis. Nature. 1999 Jan 14;397(6715):168-71. DOI:10.1038/16483 | PubMed ID:9923680 | HubMed [Alon]
  2. Spiro PA, Parkinson JS, and Othmer HG. A model of excitation and adaptation in bacterial chemotaxis. Proc Natl Acad Sci U S A. 1997 Jul 8;94(14):7263-8. PubMed ID:9207079 | HubMed [Spiro]
  3. Sourjik V and Berg HC. Binding of the Escherichia coli response regulator CheY to its target measured in vivo by fluorescence resonance energy transfer. Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12669-74. DOI:10.1073/pnas.192463199 | PubMed ID:12232047 | HubMed [Sourjik1]
  4. Sourjik V and Berg HC. Receptor sensitivity in bacterial chemotaxis. Proc Natl Acad Sci U S A. 2002 Jan 8;99(1):123-7. DOI:10.1073/pnas.011589998 | PubMed ID:11742065 | HubMed [Sourjik2]
  5. Cluzel P, Surette M, and Leibler S. An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells. Science. 2000 Mar 3;287(5458):1652-5. PubMed ID:10698740 | HubMed [Cluzel]
  6. Vaknin A and Berg HC. Single-cell FRET imaging of phosphatase activity in the Escherichia coli chemotaxis system. Proc Natl Acad Sci U S A. 2004 Dec 7;101(49):17072-7. DOI:10.1073/pnas.0407812101 | PubMed ID:15569922 | HubMed [Vaknin]
  7. Korobkova E, Emonet T, Vilar JM, Shimizu TS, and Cluzel P. From molecular noise to behavioural variability in a single bacterium. Nature. 2004 Apr 1;428(6982):574-8. DOI:10.1038/nature02404 | PubMed ID:15058306 | HubMed [Korobdova]
All Medline abstracts: PubMed | HubMed