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Best of 2006-2007

Best of 2007-2008

Past Reading


Best of 2006-2007

Here is a list of the best papers we read in 2006-2007, chosen by popular vote:

  1. Isaacs FJ, Dwyer DJ, and Collins JJ. RNA synthetic biology. Nat Biotechnol. 2006 May;24(5):545-54. DOI:10.1038/nbt1208 | PubMed ID:16680139 | HubMed [isaacs]
  2. Bennett MR, Volfson D, Tsimring L, and Hasty J. Transient dynamics of genetic regulatory networks. Biophys J. 2007 May 15;92(10):3501-12. DOI:10.1529/biophysj.106.095638 | PubMed ID:17350994 | HubMed [bennett]
  3. Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, and Alon U. Network motifs: simple building blocks of complex networks. Science. 2002 Oct 25;298(5594):824-7. DOI:10.1126/science.298.5594.824 | PubMed ID:12399590 | HubMed [Milo]
  4. Seelig G, Soloveichik D, Zhang DY, and Winfree E. Enzyme-free nucleic acid logic circuits. Science. 2006 Dec 8;314(5805):1585-8. DOI:10.1126/science.1132493 | PubMed ID:17158324 | HubMed [seeling]
  5. Farmer WR and Liao JC. Improving lycopene production in Escherichia coli by engineering metabolic control. Nat Biotechnol. 2000 May;18(5):533-7. DOI:10.1038/75398 | PubMed ID:10802621 | HubMed [farmer]
  6. Angeli D, Ferrell JE Jr, and Sontag ED. Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems. Proc Natl Acad Sci U S A. 2004 Feb 17;101(7):1822-7. DOI:10.1073/pnas.0308265100 | PubMed ID:14766974 | HubMed [Angeli]
  7. Topp S and Gallivan JP. Guiding bacteria with small molecules and RNA. J Am Chem Soc. 2007 May 30;129(21):6807-11. DOI:10.1021/ja0692480 | PubMed ID:17480075 | HubMed [topp]
  8. Bialek W and Setayeshgar S. Physical limits to biochemical signaling. Proc Natl Acad Sci U S A. 2005 Jul 19;102(29):10040-5. DOI:10.1073/pnas.0504321102 | PubMed ID:16006514 | HubMed [Bialek]
  9. Paulsson J, Berg OG, and Ehrenberg M. Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation. Proc Natl Acad Sci U S A. 2000 Jun 20;97(13):7148-53. DOI:10.1073/pnas.110057697 | PubMed ID:10852944 | HubMed [Paulsson]
  10. Rosenfeld N, Young JW, Alon U, Swain PS, and Elowitz MB. Accurate prediction of gene feedback circuit behavior from component properties. Mol Syst Biol. 2007;3:143. DOI:10.1038/msb4100185 | PubMed ID:18004276 | HubMed [Rosenfeld]
All Medline abstracts: PubMed | HubMed