Difference between revisions of "Chan:Bioinformatics Sites"

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[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY homolog search]<br>
 
[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY homolog search]<br>
 
[http://inparanoid.sbc.su.se/cgi-bin/index.cgi Inparanoid homolog search]<br>
 
[http://inparanoid.sbc.su.se/cgi-bin/index.cgi Inparanoid homolog search]<br>
 +
[http://meme.nbcr.net/meme/intro.html MEME motif finder]<br>
 
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<b>Experimental:</b><br>
 
<b>Experimental:</b><br>

Revision as of 18:00, 28 April 2009


Chan Lab

Department of Plant Biology at UC Davis




Arabidopsis tools:
TAIR BLAST search
TIGR Arabidopsis BLAST Search
Salk Institute Genome Analysis Laboratory (SIGnaL) T-DNA Express
Primer design for T-DNAs
Dirk Inze GATEWAY vectors


Arabidopsis genome databases:
TAIR (The Arabidopsis Information Resource)
TAIR Seqviewer
AtEnsembl
WeigelWorld Resources incl. AtGenExpress
Todd Mockler expression tools
Jacobsen/Ecker Arabidopsis Methylome Database
Carrington Lab siRNA Database
MPSS Small RNAs and Transcripts


Yeast Genome Databases:
S.pombe genome database
S.cerevisiae genome database


Bioinformatics:
NCBI homepage
BLAST at NCBI
BLAST Plant Genomes
SMART Protein Domains
ClustalW at EBI
Dialign multiple sequence alignment
YOGY homolog search
Inparanoid homolog search
MEME motif finder


Experimental:
Primer3
Oligo Calculator
REBase at NEB
dCAPs Finder
Chi-square calculator
CODDLE for TILLING


Literature:
NCBI
ISI Knowledge
Google Scholar