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- RRedon:Protocols/Variation pipeline/MAQ (category NGS)Home Contact Internal Lab Members Protocols Publications Research Talks http://maq.sourceforge...886 bytes (117 words) - 08:23, 2 June 2010
- RRedon:Protocols/Variation pipeline/BWA (category NGS)Home Contact Internal Lab Members Protocols Publications Research Talks http://bio-bwa.sourceforge...1 KB (180 words) - 00:49, 9 June 2010
- RRedon:Protocols/Variation pipeline/Reference genome (category NGS)Home Contact Internal Lab Members Protocols Publications Research Talks Download the hg18/build36...2 KB (309 words) - 08:27, 2 June 2010
- RRedon:Protocols/Variation pipeline (category NGS)Research Talks See main article: RRedon:Protocols/Variation_pipeline/Reference_genome SAMTOOLS http://samtools.sourceforge.net/ MAQ BWA Mapping...5 KB (600 words) - 01:58, 18 June 2010
- RRedon:Protocols (category NGS)Protocols Publications Research Talks Variation pipeline...163 bytes (11 words) - 01:14, 31 May 2010
- Butlin:Unix for Bioinformatics - basic tutorial (section TASK 2: My NGS library has finally been sequenced and my sequencing centre has informed me that the sequence data files are on one of their password protected servers ready for download. How do I get those many Gb large files into my iceberg account (or any other Unix system)?)directory NGS_workshop. Start by making it the new working directory: $ cd ~/NGS_workshop Note this is equivalent to: $ cd /home/your_username/NGS_workshop...38 KB (5,351 words) - 11:21, 28 January 2018
- type: $ qrsh Then change to the directory NGS_workshop, that you created in the Basic Unix module: $ cd NGS_workshop/Unix_module $ zless Unix_tut_sequences...33 KB (4,704 words) - 07:18, 27 September 2017
- Intra-species Diversity Analysis System (MIDAS): An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and...11 KB (957 words) - 13:13, 17 March 2023
- analysis can be done using RNA-Seq and microarrays. (A) The RNA-Seq analysis pipeline has been implemented and the method is gaining popularity as sequencing...9 KB (431 words) - 13:34, 29 October 2018
- generation sequencing (NGS) platforms has triggered a wave of new findings based on whole transcriptome sequencing (RNA-Seq). NGS technology, however, has...23 KB (2,601 words) - 14:17, 22 July 2016
- equivalents of these in your terminal, press Enter Typical uses cases of NGS data include: de novo genome assembly mapping reads to a known genome whole...32 KB (5,232 words) - 09:36, 22 September 2014
- Biol. 2010 Mar 17;11(3):R34. Developed in Perl. It requires AB WT Analysis Pipeline http://solidsoftwaretools.com/gf/project/transcriptome/ which breaks while...12 KB (1,677 words) - 02:50, 30 September 2014
- FASTA file looks OK, that we have X lines in the file etc. First practical NGS application: Q: how many reads do we have in our FASTQ file A: count the lines...44 KB (7,298 words) - 08:55, 27 November 2013