Julius B. Lucks/Bibliography

From OpenWetWare

1. Hjelmfelt A, Weinberger ED, and Ross J. Chemical implementation of neural networks and Turing machines. Proc Natl Acad Sci U S A 1991 Dec 15; 88(24) 10983-7. pmid:1763012. PubMed HubMed PubGet [Allen-PNAS-88-1991]

   Notes

2. Hjelmfelt A, Weinberger ED, and Ross J. Chemical implementation of finite-state machines. Proc Natl Acad Sci U S A 1992 Jan 1; 89(1) 383-7. pmid:11607249. PubMed HubMed PubGet [Allen-PNAS-89-1992]

   Notes

3. Forterre P. Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain. Proc Natl Acad Sci U S A 2006 Mar 7; 103(10) 3669-74. doi:10.1073/pnas.0510333103 pmid:16505372. PubMed HubMed PubGet [Forterre-PNAS-2006]

   Notes

4. Forterre P. The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells. Biochimie 2005 Sep-Oct; 87(9-10) 793-803. doi:10.1016/j.biochi.2005.03.015 pmid:16164990. PubMed HubMed PubGet [Forterre-Biochimie-2005]

   Notes

5. Ham TS, Lee SK, Keasling JD, and Arkin AP. A tightly regulated inducible expression system utilizing the fim inversion recombination switch. Biotechnol Bioeng 2006 May 5; 94(1) 1-4. doi:10.1002/bit.20916 pmid:16534780. PubMed HubMed PubGet [Ham-BiotechBioengineering-94-2006]

   Notes

6. Podhajska AJ, Hasan N, and Szybalski W. Control of cloned gene expression by promoter inversion in vivo: construction of the heat-pulse-activated att-nutL-p-att-N module. Gene 1985; 40(1) 163-8. pmid:3005124. PubMed HubMed PubGet [Podhajska-Gene-40-1985]

   Notes

7. Sanger F, Coulson AR, Hong GF, Hill DF, and Petersen GB. Nucleotide sequence of bacteriophage lambda DNA. J Mol Biol 1982 Dec 25; 162(4) 729-73. pmid:6221115. PubMed HubMed PubGet [Sanger-JMolBiol-1982]

   Notes

8. Tan C, Song H, Niemi J, and You L. A synthetic biology challenge: making cells compute. Mol Biosyst 2007 May; 3(5) 343-53. doi:10.1039/b618473c pmid:17460793. PubMed HubMed PubGet [Tan-MolBiosyst-2007]

   Notes

9. Zeldovich KB, Berezovsky IN, and Shakhnovich EI. Protein and DNA sequence determinants of thermophilic adaptation. PLoS Comput Biol 2007 Jan 12; 3(1) e5. doi:10.1371/journal.pcbi.0030005 pmid:17222055. PubMed HubMed PubGet [Zeldovich-PLoSCompBio-2007]

   Notes

10. Drummond DA, Bloom JD, Adami C, Wilke CO, and Arnold FH. Why highly expressed proteins evolve slowly. Proc Natl Acad Sci U S A 2005 Oct 4; 102(40) 14338-43. doi:10.1073/pnas.0504070102 pmid:16176987. PubMed HubMed PubGet [Drummond-PNAS-2005]
11. Drummond DA, Raval A, and Wilke CO. A single determinant dominates the rate of yeast protein evolution. Mol Biol Evol 2006 Feb; 23(2) 327-37. doi:10.1093/molbev/msj038 pmid:16237209. PubMed HubMed PubGet [Drummond-MBE-2006]
12. Plotkin JB and Fraser HB. Assessing the determinants of evolutionary rates in the presence of noise. Mol Biol Evol 2007 May; 24(5) 1113-21. doi:10.1093/molbev/msm044 pmid:17347158. PubMed HubMed PubGet [Plotkin-Fraser-MBE-2007]
13. von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, and Bork P. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2002 May 23; 417(6887) 399-403. doi:10.1038/nature750 pmid:12000970. PubMed HubMed PubGet [vonMering-Nature-2002]
14. Drake, J. W. (1970) The Molecular Basis of Mutation. Holden-Day, San Francisco

    [Drake-Book-1970]

    Notes

15. edited by Richard Calendar; with editorial assistance by Stephen T. Abedon. The bacteriophages. Oxford; Oxford University Press, 2006. isbn:9780195148503. [Calendar-Book-2004]
16. JACOB F, FUERST R, and WOLLMAN EL. [Defective lysogenic bacteria. II. Physiological types resulting from prophage mutations.]. Ann Inst Pasteur (Paris) 1957 Dec; 93(6) 724-53. pmid:13498456. PubMed HubMed PubGet [Jacob-AnnInstPasteur-1957]
17. Mao C, LaBean TH, Relf JH, and Seeman NC. Logical computation using algorithmic self-assembly of DNA triple-crossover molecules. Nature 2000 Sep 28; 407(6803) 493-6. doi:10.1038/35035038 pmid:11028996. PubMed HubMed PubGet [Mao-Nature-407-2000]

    Notes

18. Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ. Programmable cells: interfacing natural and engineered gene networks. Proc Natl Acad Sci U S A 2004 Jun 1; 101(22) 8414-9. doi:10.1073/pnas.0402940101 pmid:15159530. PubMed HubMed PubGet [Kobayashi-PNAS-101-2004]

    Notes

19. Simpson ML, Sayler GS, Fleming JT, and Applegate B. Whole-cell biocomputing. Trends Biotechnol 2001 Aug; 19(8) 317-23. pmid:11451474. PubMed HubMed PubGet [Simpson-TrendsBiotechnol-19-2001]

    doi:10.1016/S0167-7799(01)01691-2 Notes

20. Weiss R., Basu S., Hooshangi S., Kalmbach A., Karig D., Mehreja R., Netravali I. Genetic circuit building blocks for cellular computation, communications, and signal processing. PDF

    [Weiss-NatComput-2-2003]

    Notes

21. Gottesman ME and Weisberg RA. Little lambda, who made thee?. Microbiol Mol Biol Rev 2004 Dec; 68(4) 796-813. doi:10.1128/MMBR.68.4.796-813.2004 pmid:15590784. PubMed HubMed PubGet [Gottesman-MicrobiolMolBiolRev-68-2004]

    Notes