Julius B. Lucks/Bibliography

1. Hjelmfelt A, Weinberger ED, and Ross J. Chemical implementation of neural networks and Turing machines. Proc Natl Acad Sci U S A. 1991 Dec 15;88(24):10983-7. DOI:10.1073/pnas.88.24.10983 |

   Notes

2. Hjelmfelt A, Weinberger ED, and Ross J. Chemical implementation of finite-state machines. Proc Natl Acad Sci U S A. 1992 Jan 1;89(1):383-7. DOI:10.1073/pnas.89.1.383 |

   Notes

3. Forterre P. Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain. Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3669-74. DOI:10.1073/pnas.0510333103 |

   Notes

4. Forterre P. The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells. Biochimie. 2005 Sep-Oct;87(9-10):793-803. DOI:10.1016/j.biochi.2005.03.015 |

   Notes

5. Ham TS, Lee SK, Keasling JD, and Arkin AP. A tightly regulated inducible expression system utilizing the fim inversion recombination switch. Biotechnol Bioeng. 2006 May 5;94(1):1-4. DOI:10.1002/bit.20916 |

   Notes

6. Podhajska AJ, Hasan N, and Szybalski W. Control of cloned gene expression by promoter inversion in vivo: construction of the heat-pulse-activated att-nutL-p-att-N module. Gene. 1985;40(1):163-8. DOI:10.1016/0378-1119(85)90038-1 |

   Notes

7. Sanger F, Coulson AR, Hong GF, Hill DF, and Petersen GB. Nucleotide sequence of bacteriophage lambda DNA. J Mol Biol. 1982 Dec 25;162(4):729-73. DOI:10.1016/0022-2836(82)90546-0 |

   Notes

8. Tan C, Song H, Niemi J, and You L. A synthetic biology challenge: making cells compute. Mol Biosyst. 2007 May;3(5):343-53. DOI:10.1039/b618473c |

   Notes

9. Zeldovich KB, Berezovsky IN, and Shakhnovich EI. Protein and DNA sequence determinants of thermophilic adaptation. PLoS Comput Biol. 2007 Jan 12;3(1):e5. DOI:10.1371/journal.pcbi.0030005 |

   Notes

10. Drummond DA, Bloom JD, Adami C, Wilke CO, and Arnold FH. Why highly expressed proteins evolve slowly. Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14338-43. DOI:10.1073/pnas.0504070102 |
11. Drummond DA, Raval A, and Wilke CO. A single determinant dominates the rate of yeast protein evolution. Mol Biol Evol. 2006 Feb;23(2):327-37. DOI:10.1093/molbev/msj038 |
12. Plotkin JB and Fraser HB. Assessing the determinants of evolutionary rates in the presence of noise. Mol Biol Evol. 2007 May;24(5):1113-21. DOI:10.1093/molbev/msm044 |
13. von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, and Bork P. Comparative assessment of large-scale data sets of protein-protein interactions. Nature. 2002 May 23;417(6887):399-403. DOI:10.1038/nature750 |

14. Drake, J. W. (1970) The Molecular Basis of Mutation. Holden-Day, San Francisco

    Notes

15. ISBN:9780195148503
16. JACOB F, FUERST R, and WOLLMAN EL. [Defective lysogenic bacteria. II. Physiological types resulting from prophage mutations]. Ann Inst Pasteur (Paris). 1957 Dec;93(6):724-53.
17. Mao C, LaBean TH, Relf JH, and Seeman NC. Logical computation using algorithmic self-assembly of DNA triple-crossover molecules. Nature. 2000 Sep 28;407(6803):493-6. DOI:10.1038/35035038 |

    Notes

18. Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ. Programmable cells: interfacing natural and engineered gene networks. Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8414-9. DOI:10.1073/pnas.0402940101 |

    Notes

19. Simpson ML, Sayler GS, Fleming JT, and Applegate B. Whole-cell biocomputing. Trends Biotechnol. 2001 Aug;19(8):317-23. DOI:10.1016/s0167-7799(01)01691-2 |

    doi:10.1016/S0167-7799(01)01691-2 Notes

20. Weiss R., Basu S., Hooshangi S., Kalmbach A., Karig D., Mehreja R., Netravali I. Genetic circuit building blocks for cellular computation, communications, and signal processing. PDF

    Notes

21. Gottesman ME and Weisberg RA. Little lambda, who made thee?. Microbiol Mol Biol Rev. 2004 Dec;68(4):796-813. DOI:10.1128/MMBR.68.4.796-813.2004 |

    Notes