Registry of Standard Biological Models/Basic Component Models: Difference between revisions

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Here is a list of basic components available in the DNA Registry, each link intends to illustrate different modeling approaches and CellML descriptions:
Here is a list of basic components available in the DNA Registry, each link intends to illustrate different modeling approaches and CellML descriptions:


*Building blocks:
{| border = "1" align="center"
**[[Registry of Standard Biological Models/Basic_Component_Models/BioBrick Environment|BioBrick Environment]]
|+ BioBricks Building Blocks
** [[Registry of Standard Biological Models/Basic_Component_Models/Constitutive Promoter|Constitutive Promoter]]
|-
** [[Registry of Standard Biological Models/Basic_Component_Models/Activated Promoter|Activated Promoter]]
|[[Image:VBB_Environment.png|left|50px|BioBrick Environment]]<br> [[Registry of Standard Biological Models/Basic_Component_Models/BioBrick Environment|Environment]]
** [[Registry of Standard Biological Models/Basic_Component_Models/Repressed Promoter|Repressed Promoter]]
|-
** [[Registry of Standard Biological Models/Basic_Component_Models/Ribosome binding site (RBS)|Ribosome binding site (RBS)]]
|[[Image:VBB_ConstitutivePromoter.png|left|50px|BioBrick ConstitutivePromoter]] <br> [[Registry of Standard Biological Models/Basic_Component_Models/Constitutive_Promoter|Constitutive_Promoter]]
** [[Registry of Standard Biological Models/Basic_Component_Models/Promoter_RBS_Coupled |Promoter_RBS_Coupled ]]
||
** [[Registry of Standard Biological Models/Basic_Component_Models/Activated_Promoter_RBS_Coupled |Activated_Promoter_RBS_Coupled ]]
[[Image:VBB_ActivatedPromoter.png|left|50px|BioBrick Activated Promoter]] <br> [[Registry of Standard Biological Models/Basic_Component_Models/Activated_Promoter|Activated_Promoter]]
** [[Registry of Standard Biological Models/Basic_Component_Models/Repressed_Promoter_RBS_Coupled |Repressed_Promoter_RBS_Coupled ]]
||
** [[Registry of Standard Biological Models/Basic_Component_Models/mRNA|mRNA]]
[[Image:VBB_RepressedPromoter.png|left|50px|BioBrick RepressedPromoter]] <br> [[Registry of Standard Biological Models/Basic_Component_Models/Repressed Promoter|Repressed_Promoter]]
** [[Registry of Standard Biological Models/Basic_Component_Models/Protein|Protein]]
|-
|[[Image:VBB_ConstitutivePromoterRBS.png|left|50px|PromoterRBS]] <br> [[Registry of Standard Biological Models/Basic_Component_Models/Promoter_RBS_Coupled|Promoter_RBS_Coupled]]
||
[[Image:VBB_ActivatedPromoterRBS.png|left|50px| Activated Promoter RBS]] <br> [[Registry of Standard Biological Models/Basic_Component_Models/Activated_Promoter_RBS_Coupled|Activated_Promoter_RBS_Coupled]]
||
[[Image:VBB_RepressedPromoterRBS.png|left|50px|Repressed PromoterRBS]] <br> [[Registry of Standard Biological Models/Basic_Component_Models/Repressed_Promoter_RBS_Coupled|Repressed_Promoter_RBS_Coupled]]
|-
|[[Image:VBB_RBS.png|left|50px|RBS]] <br> [[Registry of Standard Biological Models/Basic_Component_Models/Ribosome_binding_site_(RBS)|RBS]]
||
[[Image:VBB_mRNA.png|left|50px|mRNA]] <br> [[Registry of Standard Biological Models/Basic_Component_Models/mRNA|mRNA]]
||
[[Image:VBB_Protein.png|left|50px|Protein]] <br> [[Registry of Standard Biological Models/Basic_Component_Models/Protein|Protein]]
|}
 


*attempt to fuse RBS and mRNA concepts together. it could show a more universal interface, equivalent to the promoter_RBS_coupled
*attempt to fuse RBS and mRNA concepts together. it could show a more universal interface, equivalent to the promoter_RBS_coupled

Revision as of 10:29, 9 September 2006

Here is a list of basic components available in the DNA Registry, each link intends to illustrate different modeling approaches and CellML descriptions:

BioBricks Building Blocks
BioBrick Environment
BioBrick Environment

Environment
BioBrick ConstitutivePromoter
BioBrick ConstitutivePromoter

Constitutive_Promoter
BioBrick Activated Promoter
BioBrick Activated Promoter

Activated_Promoter
BioBrick RepressedPromoter
BioBrick RepressedPromoter

Repressed_Promoter
PromoterRBS
PromoterRBS

Promoter_RBS_Coupled
Activated Promoter RBS
Activated Promoter RBS

Activated_Promoter_RBS_Coupled
Repressed PromoterRBS
Repressed PromoterRBS

Repressed_Promoter_RBS_Coupled
RBS
RBS

RBS
mRNA
mRNA

mRNA
Protein
Protein

Protein


  • attempt to fuse RBS and mRNA concepts together. it could show a more universal interface, equivalent to the promoter_RBS_coupled


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