Registry of Standard Biological Models/Basic Component Models/Oscillator

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ID: Ring Oscillator

  • Description: Ring Oscillator based on 3 inverters (original idea M.Elowitz)
  • Hypothesis:
    • all hypothesis applicable to sub-parts
  • Inputs:
    • nb-gene-copies
  • Outputs:
    • Protein1
    • Protein2
    • Protein3
  • Internal parameters:
    •  ???

CellML structure (CellML 1.1 spec)

  • Component: Inverter
  • Units:
    • TBD
  • Imports:
    • Components:
      • inverter1
      • inverter2
      • inverter3
  • Variables:
    • time (public interface = in)
    • nbGeneCopies (public interface = in)
    • protein1 (public interface = out / init value = 0.)
    • protein2 (public interface = out / init value = 0.)
    • protein3 (public interface = out / init value = 0.)
  • MathML
    • none

Comments

  • Don't know how to import 3 instances of the same component ???
  • No too sure how to connect the components together following the import
  • Do I have to declare all the variables I need to use from the imported components ?
  • How do I 'trigger' the dynamic behaviour of the sub-components ?
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