Beauchamp:Lab Notebook
From OpenWetWare
General Important Notes
- How To Install Software and set up new computers
- How To order things for the lab
- Information for Subjects and Experimenters, such as Human Subjects Training
MRI: Cortical Surface Models
- Preparation for Creating Cortical Surface Models
- Creating Cortical Surface Models
- Using Cortical Surface Models
- What If a Cortical Surface Model Exists Already
- What If Cortical Surface Model Looks Bad
- Creating Standardized Surface Models
- FreeSurfer Standard Surface Models
- Finding Distances on the Surface
- Finding Closest node on the Surface
- SUMA
- Free Surfer
- Caret
MRI: fMRI Experimental Design and Analysis
- Creating Random Stimulus Orderings For Rapid Event-Related Designs
- Overview of fMRI Analysis
- Motion and Distortion Correction
- Creating AFNI BRIKs from MR Data
- Creating Volume Average Datasets with AFNI
- MVPA Notes
- RealTimefMRI
MRI: DTI Analysis
- Processing Diffusion Tensor Imaging Data
- Automatic VOI Initialization for Interactive Tractography
- Deterministic Tractography Constrained by Image Masks
TMS/TMS+MRI
NIRS
Electrophysiology/Electrophysiology+MRI
- Electrode Localization and Naming
- Electrophysiology Protocols
- Analyzing ECoG data (by Adam Burch)
- Making Resting State Correlation Maps