Van Oudenaarden Lab:T26C11.7

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Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:


>T26C11.7 (ceh-39 spliced coding region)

atggacttctccaacacataccgaaattacggagaggtcgtcgacttcccagaggacttcctcagtgactacgttccaac tgtgaaaagcgagccagagccagctgcaattgcaccgtccgtttgcgagcctccaatttcaacgacacgaaactatggaa cggactttggcagagcttcttcgatgtgcggatcgtcttcttcttcgtcctcttcgtcgtactcatcgggatcgtcgccg aactatttgaccgaaaacggaggagatacagaagagccgaggttcgaggaattggtgtctaggaaaatgagtttcgacag tgaaaatgttgctcaggtgagcaaccaaatggattatgcaagagatacttatgcagattcacgtattccatttgcttcaa ttgactccaacgatgctctgcttccatatccagtgaacaattatgtggctgcactaccagttccagttccagcaaagaaa tccagaggcagaactgcaccaagaactccgaagtctctagaaacttcgaaaccaggccgcggggtcaagcgcccggcttc caaagaaattgatgctaaagaccttggaatcggagatctctcggctcacatgaacaggcagattggcgatgatgaagagc tcgacactcaactcatcgctcatcgtattctggacgagctcaaagagcaatgcatcccacaagcttcacttgccgttaaa gttctaggcagaagccaaggaacactgtcggatctgctccgcaagccgaaaccatggggcattatgaagaatggtcgagg aacgttccagcgtatggccaactggcttgacttggatccggtagttcgtcgtgcattgtgctttatgaaaaaggaagatg ttgcgaggatcactgggatggctgagccaactccagcaaaaagagcacgccaaacaacgcctagcgacgaacgaatccga cgcttcacattcacgcaaacccagctcgactcgttgcatacagtcttccaacaacaagatcgtccgaatcgcgaaatgca acaggctctgagtgcgacattgaagctcaaccgttccaccgtcggcaatttctttatgaacgcccgccgtcgtcttccaa aagctgcaccggtcagtcaaaaccttgtcgccgaacacgccattgatcacaatcaaccgggacccagccaccattattaa


Name of probe set: ceh-39

Probes designed on Mon, 01 Mar 10 13:11:13 -0700

48 probes designed for target of length 1200

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

gtatgtgttggagaagtcca, ceh-39_1, 1, 2, 45

cgacgacctctccgtaattt, ceh-39_2, 2, 24, 50

agtcactgaggaagtcctct, ceh-39_3, 3, 51, 50

tcgcttttcacagttggaac, ceh-39_4, 4, 73, 45

tgcaattgcagctggctctg, ceh-39_5, 5, 95, 55

aaattggaggctcgcaaacg, ceh-39_6, 6, 120, 50

gttccatagtttcgtgtcgt, ceh-39_7, 7, 142, 45

cgaagaagctctgccaaagt, ceh-39_8, 8, 164, 50

aagaagaagacgatccgcac, ceh-39_9, 9, 186, 50

gatgagtacgacgaagagga, ceh-39_10, 10, 208, 50

tcaaatagttcggcgacgat, ceh-39_11, 11, 231, 45

tctgtatctcctccgttttc, ceh-39_12, 12, 253, 45

acaccaattcctcgaacctc, ceh-39_13, 13, 279, 50

ctgtcgaaactcattttcct, ceh-39_14, 14, 301, 40

gctcacctgagcaacatttt, ceh-39_15, 15, 323, 45

ctcttgcataatccatttgg, ceh-39_16, 16, 345, 40

ggaatacgtgaatctgcata, ceh-39_17, 17, 370, 40

cgttggagtcaattgaagca, ceh-39_18, 18, 393, 45

tcactggatatggaagcaga, ceh-39_19, 19, 417, 45

ggtagtgcagccacataatt, ceh-39_20, 20, 439, 45

gatttctttgctggaactgg, ceh-39_21, 21, 463, 45

ttcttggtgcagttctgcct, ceh-39_22, 22, 486, 50

gaagtttctagagacttcgg, ceh-39_23, 23, 508, 45

tcaatttctttggaagccgg, ceh-39_24, 24, 553, 45

tccgattccaaggtctttag, ceh-39_25, 25, 575, 45

tgttcatgtgagccgagaga, ceh-39_26, 26, 597, 50

tcttcatcatcgccaatctg, ceh-39_27, 27, 619, 45

atgagcgatgagttgagtgt, ceh-39_28, 28, 644, 45

ctttgagctcgtccagaata, ceh-39_29, 29, 666, 45

tgaagcttgtgggatgcatt, ceh-39_30, 30, 689, 45

tgcctagaactttaacggca, ceh-39_31, 31, 711, 45

agatccgacagtgttccttg, ceh-39_32, 32, 736, 50

tcataatgccccatggtttc, ceh-39_33, 33, 768, 45

tggaacgttcctcgaccatt, ceh-39_34, 34, 790, 50

agtcaagccagttggccata, ceh-39_35, 35, 813, 50

aaagcacaatgcacgacgaa, ceh-39_36, 36, 845, 45

cctcgcaacatcttcctttt, ceh-39_37, 37, 869, 45

tttttgctggagttggctca, ceh-39_38, 38, 903, 45

ttcgtcgctaggcgttgttt, ceh-39_39, 39, 932, 50

tgaatgtgaagcgtcggatt, ceh-39_40, 40, 954, 45

aagactgtatgcaacgagtc, ceh-39_41, 41, 988, 45

gattcggacgatcttgttgt, ceh-39_42, 42, 1011, 45

actcagagcctgttgcattt, ceh-39_43, 43, 1034, 45

aacggttgagcttcaatgtc, ceh-39_44, 44, 1056, 45

cataaagaaattgccgacgg, ceh-39_45, 45, 1079, 45

tgcagcttttggaagacgac, ceh-39_46, 46, 1109, 50

cgacaaggttttgactgacc, ceh-39_47, 47, 1131, 50

ttgtgatcaatggcgtgttc, ceh-39_48, 48, 1153, 45