Van Oudenaarden Lab:R13A5.5
Progress:
Probes designed: (02-28-2010 - Alexander van Oudenaarden)
Probes coupled:
Probes purified:
Probes tested:
Dyes available:
>R13A5.5 (ceh-13 spliced coding region + 3'-UTR)
atgagctccactgaatgttatggagctcctccccataactattaccaagattggccaacaactcattcttattatccatc agttccttcttcgtattctccactgaatcatcatccagctgatatttgggcagctcatccatccaactacattatgggaa atggccacgtatcaccaccggcaacagcttcaggactttctccgccggcaagtagatcctcgaactcttcagcggagctt ccgacaggggtgacagcatcacagcataacacatacaagtggatgcatacaaaacggtcacaaagaccagctgccccaaa aaagaaggtgatagacgaaaatggaacaaatcgaaccaacttcacaacacatcaactgacagagcttgaaaaggaatttc acacagcaaaatatgtcaatcgaacgagacgaactgaaattgcttcaaatctgaaactgcaggaggctcaggtcaaaatc tggtttcaaaatcgtcgaatgaaggagaaaaagcgtgaaaaagaaaaggcattcctggcccgtaacacatgggaatccaa ctcaccgacatcgtcatgcagtggagaagatgtcaaaaacttcaagtaa
tccatccgt ctccaatctatttttataatttttttgttacctctccatacgcttacttagagctcgacttctaagcgggtaaacttgtc ttgtttccaataattttaattattctaatcagtttttaagacccatgttctcatcgaacaacttccctgaaatttcgctt ctttctcaatcaaatttcgaatgtcttcactcttccacctccatccaaaaatcaatttctcagaaaatatataacaaatt ttgcgcatttttcacatattttcatttctcctcaattaacaatgataacgttacatgaaaatcttactgtacaggaagat gttcagaaaactgtcattttgaattacaatcaagagaattcaactaaaactgaggggtactgtagacgcctcgccccctt tttttggaaagaccggttcgtcatagctgacgtcaatacacataccctcaaaaaatgaaataaagaaag
Name of probe set: ceh-13
Probes designed on Sun, 28 Feb 10 18:56:08 -0700
48 probes designed for target of length 1087
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
taacattcagtggagctcat, ceh-13_1, 1, 1, 40
atagttatggggaggagctc, ceh-13_2, 2, 23, 50
gagttgttggccaatcttgg, ceh-13_3, 3, 45, 50
ggaactgatggataataaga, ceh-13_4, 4, 67, 35
attcagtggagaatacgaag, ceh-13_5, 5, 89, 40
cccaaatatcagctggatga, ceh-13_6, 6, 111, 45
atgtagttggatggatgagc, ceh-13_7, 7, 133, 45
tgatacgtggccatttccca, ceh-13_8, 8, 155, 50
gtcctgaagctgttgccggt, ceh-13_9, 9, 177, 60
gatctacttgccggcggaga, ceh-13_10, 10, 199, 60
aagctccgctgaagagttcg, ceh-13_11, 11, 221, 55
tgtgatgctgtcacccctgt, ceh-13_12, 12, 244, 55
gcatccacttgtatgtgtta, ceh-13_13, 13, 267, 40
ggtctttgtgaccgttttgt, ceh-13_14, 14, 289, 45
caccttcttttttggggcag, ceh-13_15, 15, 311, 50
gatttgttccattttcgtct, ceh-13_16, 16, 333, 35
tgatgtgttgtgaagttggt, ceh-13_17, 17, 355, 40
ttccttttcaagctctgtca, ceh-13_18, 18, 377, 40
tgacatattttgctgtgtga, ceh-13_19, 19, 399, 35
atttcagttcgtctcgttcg, ceh-13_20, 20, 421, 45
ctgcagtttcagatttgaag, ceh-13_21, 21, 443, 40
accagattttgacctgagcc, ceh-13_22, 22, 465, 50
tccttcattcgacgattttg, ceh-13_23, 23, 487, 40
cttttctttttcacgctttt, ceh-13_24, 24, 509, 30
atgtgttacgggccaggaat, ceh-13_25, 25, 531, 50
gatgtcggtgagttggattc, ceh-13_26, 26, 553, 50
gacatcttctccactgcatg, ceh-13_27, 27, 575, 50
ggatggattacttgaagttt, ceh-13_28, 28, 597, 35
attataaaaatagattggag, ceh-13_29, 29, 619, 20
gcgtatggagaggtaacaaa, ceh-13_30, 30, 642, 45
cttagaagtcgagctctaag, ceh-13_31, 31, 665, 45
ggaaacaagacaagtttacc, ceh-13_32, 32, 687, 40
gggtcttaaaaactgattag, ceh-13_33, 33, 723, 35
ggaagttgttcgatgagaac, ceh-13_34, 34, 745, 45
tgagaaagaagcgaaatttc, ceh-13_35, 35, 767, 35
gtgaagacattcgaaatttg, ceh-13_36, 36, 789, 35
gatttttggatggaggtgga, ceh-13_37, 37, 812, 45
gttatatattttctgagaaa, ceh-13_38, 38, 834, 20
atgtgaaaaatgcgcaaaat, ceh-13_39, 39, 856, 30
gttaattgaggagaaatgaa, ceh-13_40, 40, 879, 30
gattttcatgtaacgttatc, ceh-13_41, 41, 902, 30
ctgaacatcttcctgtacag, ceh-13_42, 42, 925, 45
tgtaattcaaaatgacagtt, ceh-13_43, 43, 947, 25
gttttagttgaattctcttg, ceh-13_44, 44, 969, 30
gaggcgtctacagtacccct, ceh-13_45, 45, 991, 60
ggtctttccaaaaaaagggg, ceh-13_46, 46, 1013, 45
ttgacgtcagctatgacgaa, ceh-13_47, 47, 1035, 45
tcattttttgagggtatgtg, ceh-13_48, 48, 1057, 35
