Van Oudenaarden Lab:R08B4.2
Progress:
Probes designed: (03-01-2010 - Alexander van Oudenaarden)
Probes coupled:
Probes purified:
Probes tested:
Dyes available:
>R08B4.2 (alr-1 spliced coding region + 5'-UTR)
ttttcgcttccttctttcaactttggtaaatcgtttcaacttggattcacattgtgt
atgcccgagttgaagaaagaagactcttccaaagacgagaaagatctagacatgaactgcccgccacttcacaggcccaa tggagctgatttgaatcagtattcaaaaagtcttatggaacagttacaggcacaattgtttgcaaatccagcgttacagt tcccatcatttccaccagctttttctattgcggcgctgactaataatcagcatgagctgaaagaagacgatggaaagaaa acgcccactggagataatattttagaagctgcctcagtacttgacaatagagaaaacggatccccttcagatggcacaaa cagtccggatgataatggaaagaggaaacaaagaagataccgtacaacattcagtgcatttcagttggacgagcttgaga aggtgtttgccaggactcactatccagatgtgttcactcgggaagaattggcaacacgagtccagctcacagaggcccga gttcaagtttggtttcaaaacagacgagccaagtatcgcaaacaagaacgcagcagtactcatcacccttatcaagctcc aatgagtattccaaattcaaatggagataatccgtaccagatgatgctcagccaagaagctatttttgcagctatcaatc agcaagccgcggctcatcttttaaatgaacaagtacggattgcaacatctgatcgtcggtctcagtccccgtctgtacca gtgaccacatcttctccaatcttgccaacttctgtgacacctacgttccaaaacgcagatgcattaaatatgttgttcgg tggaattactcctgttacgcagcagttgctttatgttcaacaattcagcagagctatggatgctttccgcactcagcttc tgggatcagtcccagcaggagctacggctgaagtcaccgatgttgtagcattaaaaactgaagactcgaaatcgaatagt agagcgggaagctcatcacccactccaactgaaagttccggagctgctgcaacatccacgagtcctacgaattttgctga catgaatagtctgatatccgatgtgaagccaaaagaagaaagttcatga
Name of probe set: alr-1
Probes designed on Mon, 01 Mar 10 08:46:44 -0700
48 probes designed for target of length 1146
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
gttgaaagaaggaagcgaaa, alr-1_1, 1, 2, 40
ccaagttgaaacgatttacc, alr-1_2, 2, 25, 40
aactcgggcatacacaatgt, alr-1_3, 3, 49, 45
cgtctttggaagagtcttct, alr-1_4, 4, 75, 45
ggcagttcatgtctagatct, alr-1_5, 5, 99, 45
ttcaaatcagctccattggg, alr-1_6, 6, 133, 45
ctgttccataagactttttg, alr-1_7, 7, 161, 35
ttgcaaacaattgtgcctgt, alr-1_8, 8, 183, 40
atgatgggaactgtaacgct, alr-1_9, 9, 207, 45
gcaatagaaaaagctggtgg, alr-1_10, 10, 229, 45
atgctgattattagtcagcg, alr-1_11, 11, 251, 40
ttccatcgtcttctttcagc, alr-1_12, 12, 273, 45
ttatctccagtgggcgtttt, alr-1_13, 13, 295, 45
gtactgaggcagcttctaaa, alr-1_14, 14, 318, 45
gatccgttttctctattgtc, alr-1_15, 15, 340, 40
actgtttgtgccatctgaag, alr-1_16, 16, 362, 45
tcctctttccattatcatcc, alr-1_17, 17, 384, 40
gttgtacggtatcttctttg, alr-1_18, 18, 406, 40
gtccaactgaaatgcactga, alr-1_19, 19, 428, 45
tggcaaacaccttctcaagc, alr-1_20, 20, 450, 50
gaacacatctggatagtgag, alr-1_21, 21, 473, 45
actcgtgttgccaattcttc, alr-1_22, 22, 499, 45
ttgaactcgggcctctgtga, alr-1_23, 23, 524, 55
gctcgtctgttttgaaacca, alr-1_24, 24, 547, 45
gcgttcttgtttgcgatact, alr-1_25, 25, 569, 45
gataagggtgatgagtactg, alr-1_26, 26, 591, 45
tttggaatactcattggagc, alr-1_27, 27, 613, 40
ctggtacggattatctccat, alr-1_28, 28, 638, 45
atagcttcttggctgagcat, alr-1_29, 29, 661, 45
ttgctgattgatagctgcaa, alr-1_30, 30, 683, 40
catttaaaagatgagccgcg, alr-1_31, 31, 705, 45
gatgttgcaatccgtacttg, alr-1_32, 32, 727, 45
aagatgtggtcactggtaca, alr-1_33, 33, 771, 45
acagaagttggcaagattgg, alr-1_34, 34, 793, 45
atctgcgttttggaacgtag, alr-1_35, 35, 818, 45
gtaattccaccgaacaacat, alr-1_36, 36, 847, 40
aaagcaactgctgcgtaaca, alr-1_37, 37, 870, 45
gctctgctgaattgttgaac, alr-1_38, 38, 892, 45
aagctgagtgcggaaagcat, alr-1_39, 39, 917, 50
tagctcctgctgggactgat, alr-1_40, 40, 942, 55
acaacatcggtgacttcagc, alr-1_41, 41, 964, 50
cgagtcttcagtttttaatg, alr-1_42, 42, 986, 35
ttcccgctctactattcgat, alr-1_43, 43, 1008, 45
tcagttggagtgggtgatga, alr-1_44, 44, 1030, 50
atgttgcagcagctccggaa, alr-1_45, 45, 1053, 55
gcaaaattcgtaggactcgt, alr-1_46, 46, 1075, 45
cggatatcagactattcatg, alr-1_47, 47, 1098, 40
ctttcttcttttggcttcac, alr-1_48, 48, 1120, 40
