Van Oudenaarden Lab:F46F3.1
Progress:
Probes designed: (03-01-2010 - Alexander van Oudenaarden)
Probes coupled:
Probes purified:
Probes tested:
Dyes available:
>F46F3.1 (ceh-27 spliced coding region + 5'-UTR)
atgtcttctggatcatccaattcctccacatcagcccctaattctgtcacaccaactactgatgctttctcaactctctc catctcagcaccggctacaactgcagcacaaatgtcttattttgccttccctaatcaatatccacatgatttctcaagct acaacacaagtgcggcctacgccaccgctccttacccaatggcaacgcatcctcaactggccaattttaatcgcttccaa accaatcagctgaatttgggacttacgacacagcagaatatgatgatatcacgaagaaagcgacgtgttctcttctcacc tcaacaagttcacgtcctggaacgcaaattccaaatcaacagatatttgagcgccgcggatcgggaaaaccttgcgaaga gtattaacttgtcggcaacacaggtgaaaatctggttccaaaatcaacgctacaagtgcaagagacaagaaaaagagaag aaaatggatggtggatgctatcgggatagtgacagggacactgattcagacagagacaatgatagtagtggatcacttgg aagttcgatgtctggaatcaagaaggaagaagatgaagatcggaaaccattcatgccatcagcagtttcatctgatacag cttgtcttccggatatctcacaacaagcattcccatatcagatgtacccttcgagttcatatatgcctccgttcttcgca taccaagcacctcctgcaaactatcctccgtctacatacaatttatcgacatcagcatttcataacctttag
ctgacattcaactatgctcaattttttttttaattttc tcaatttcaatctaaaaatctcgtgactcttctgttctctttccttccccaatcctcaatgagcttctcatttttttatt ccaaaaattgaaaaatcccaacactaaactggtatgtatttatatgcgttgttgctatatttttgatattatataatctt
Name of probe set: ceh-27
Probes designed on Mon, 01 Mar 10 12:40:29 -0700
44 probes designed for target of length 990 (target too short for 48 probes)
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
ttggatgatccagaagacat, ceh-27_1, 1, 1, 40
aattaggggctgatgtggag, ceh-27_2, 2, 24, 50
gcatcagtagttggtgtgac, ceh-27_3, 3, 46, 50
tgagatggagagagttgaga, ceh-27_4, 4, 68, 45
ttgtgctgcagttgtagccg, ceh-27_5, 5, 92, 55
tagggaaggcaaaataagac, ceh-27_6, 6, 114, 40
gagaaatcatgtggatattg, ceh-27_7, 7, 136, 35
taggccgcacttgtgttgta, ceh-27_8, 8, 160, 50
ttgccattgggtaaggagcg, ceh-27_9, 9, 186, 55
aaattggccagttgaggatg, ceh-27_10, 10, 208, 45
ctgattggtttggaagcgat, ceh-27_11, 11, 230, 45
gtgtcgtaagtcccaaattc, ceh-27_12, 12, 252, 45
cgtgatatcatcatattctg, ceh-27_13, 13, 274, 35
gaagagaacacgtcgctttc, ceh-27_14, 14, 296, 50
ggacgtgaacttgttgaggt, ceh-27_15, 15, 318, 50
ttgatttggaatttgcgttc, ceh-27_16, 16, 340, 35
atccgcggcgctcaaatatc, ceh-27_17, 17, 362, 55
tactcttcgcaaggttttcc, ceh-27_18, 18, 384, 45
acctgtgttgccgacaagtt, ceh-27_19, 19, 406, 50
cgttgattttggaaccagat, ceh-27_20, 20, 430, 40
ttcttgtctcttgcacttgt, ceh-27_21, 21, 452, 40
caccatccattttcttctct, ceh-27_22, 22, 474, 40
ctgtcactatcccgatagca, ceh-27_23, 23, 496, 50
gtctctgtctgaatcagtgt, ceh-27_24, 24, 518, 45
caagtgatccactactatca, ceh-27_25, 25, 540, 40
ttgattccagacatcgaact, ceh-27_26, 26, 562, 40
ccgatcttcatcttcttcct, ceh-27_27, 27, 584, 45
ctgctgatggcatgaatggt, ceh-27_28, 28, 606, 50
agacaagctgtatcagatga, ceh-27_29, 29, 628, 40
tgcttgttgtgagatatccg, ceh-27_30, 30, 650, 45
aagggtacatctgatatggg, ceh-27_31, 31, 672, 45
aacggaggcatatatgaact, ceh-27_32, 32, 694, 40
aggaggtgcttggtatgcga, ceh-27_33, 33, 716, 55
atgtagacggaggatagttt, ceh-27_34, 34, 738, 40
aatgctgatgtcgataaatt, ceh-27_35, 35, 760, 30
gaatgtcagctaaaggttat, ceh-27_36, 36, 782, 35
aaaaaaaaaattgagcatag, ceh-27_37, 37, 804, 20
ttagattgaaattgagaaaa, ceh-27_38, 38, 826, 20
gaacagaagagtcacgagat, ceh-27_39, 39, 848, 45
ttgaggattggggaaggaaa, ceh-27_40, 40, 870, 45
ggaataaaaaaatgagaagc, ceh-27_41, 41, 893, 30
gtgttgggatttttcaattt, ceh-27_42, 42, 915, 30
cgcatataaatacataccag, ceh-27_43, 43, 939, 35
aatatcaaaaatatagcaac, ceh-27_44, 44, 961, 20
