Van Oudenaarden Lab:C02F12.5
Progress:
Probes designed: (03-16-2010 - Apratim Sahay)
Probes coupled:
Probes purified:
Probes tested:
Dyes available:
>C02F12.5 (spliced + UTR - 652) atataatgaaagttggtacgacagtgccgggcagattcatcaatcgatcagtaaatgttgttcttcactttgctgattcaattatttttggttcccgttttatgccagtacgcttgcagttctgagttgaaatt tggaactgcgtgctctgaaaacaaaacttctacaaagtggtattatgattccaaattattgttttgctatccgtacaagt atttgggatgtggagaaggatcaaactcatttgaatccaacgagaactgccttgaatcttgtaaaccagctgaccaattt tcatgcggcggcaatactggccctgatggtgtctgcttcgctcacggagatcaaggatgcaaaaaaggaacggtgtgtgt gatgggaggaatggttggattctgctgtgataagaaaattcaagacgaatggaacaaggagaattcaccaaagtgtttga aaggtcaagttgtccaattcaagcaatggtttggaatgacgcctcttattggacgtagttgttcgcataatttctgtccc gagaaatcgacatgcgtacagggaaaatggactgcttattgttgccaataattcatctttctgtaaccctgttcttgtaatgtatatttgcgatcgaatgaatttctctgaa aaagta
Name of probe set: C02F12.5 Probes designed on Wed, 17 Mar 10 16:51:38 -0700 25 probes designed for target of length 652
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
cactgtcgtaccaactttca, C02F12.5_1, 1, 7, 45
atcgattgatgaatctgccc, C02F12.5_2, 2, 29, 45
cagcaaagtgaagaacaaca, C02F12.5_3, 3, 56, 40
ggcataaaacgggaaccaaa, C02F12.5_4, 4, 87, 45
aactcagaactgcaagcgta, C02F12.5_5, 5, 109, 45
agagcacgcagttccaaatt, C02F12.5_6, 6, 131, 45
ccactttgtagaagttttgt, C02F12.5_7, 7, 155, 35
cttgtacggatagcaaaaca, C02F12.5_8, 8, 194, 40
atccttctccacatcccaaa, C02F12.5_9, 9, 216, 45
ctcgttggattcaaatgagt, C02F12.5_10, 10, 239, 40
gtttacaagattcaaggcag, C02F12.5_11, 11, 261, 40
ccgcatgaaaattggtcagc, C02F12.5_12, 12, 283, 50
acaccatcagggccagtatt, C02F12.5_13, 13, 307, 50
tgcatccttgatctccgtga, C02F12.5_14, 14, 336, 50
atcacacacaccgttccttt, C02F12.5_15, 15, 358, 45
agcagaatccaaccattcct, C02F12.5_16, 16, 381, 45
ccttgttccattcgtcttga, C02F12.5_17, 17, 414, 45
cctttcaaacactttggtga, C02F12.5_18, 18, 439, 40
cattgcttgaattggacaac, C02F12.5_19, 19, 463, 40
caataagaggcgtcattcca, C02F12.5_20, 20, 486, 45
ggacagaaattatgcgaaca, C02F12.5_21, 21, 514, 40
ctgtacgcatgtcgatttct, C02F12.5_22, 22, 536, 45
ggcaacaataagcagtccat, C02F12.5_23, 23, 561, 45
cagggttacagaaagatgaa, C02F12.5_24, 24, 586, 40
gagaaattcattcgatcgca, C02F12.5_25, 25, 623, 40
Input sequence with probe locations:
atataatgaaagttggtacgacagtgccgggcagattcatcaatcgatcagtaaatgttgttcttcactt
actttcaaccatgctgtcac cccgtctaagtagttagcta acaacaagaagtgaa
Probe # 1, 45% GC Probe # 2, 45% GC Probe # 3, 40%
tgctgattcaattatttttggttcccgttttatgccagtacgcttgcagttctgagttgaaatttggaac acgac aaaccaagggcaaaatacgg atgcgaacgtcaagactcaa ttaaaccttg GC Probe # 4, 45% GC Probe # 5, 45% GC Probe # 6,
tgcgtgctctgaaaacaaaacttctacaaagtggtattatgattccaaattattgttttgctatccgtac acgcacgaga tgttttgaagatgtttcacc acaaaacgataggcatg
45% GC Probe # 7, 35% GC Probe # 8, 40% GC
aagtatttgggatgtggagaaggatcaaactcatttgaatccaacgagaactgccttgaatcttgtaaac ttc aaaccctacacctcttccta tgagtaaacttaggttgctc gacggaacttagaacatttg
Probe # 9, 45% GC Probe # 10, 40% GC Probe # 11, 40% GC
cagctgaccaattttcatgcggcggcaatactggccctgatggtgtctgcttcgctcacggagatcaagg
cgactggttaaaagtacgcc ttatgaccgggactaccaca agtgcctctagttcc Probe # 12, 50% GC Probe # 13, 50% GC Probe # 14, 50%
atgcaaaaaaggaacggtgtgtgtgatgggaggaatggttggattctgctgtgataagaaaattcaagac tacgt tttccttgccacacacacta tccttaccaacctaagacga agttctg
GC Probe # 15, 45% GC Probe # 16, 45% GC Probe #
gaatggaacaaggagaattcaccaaagtgtttgaaaggtcaagttgtccaattcaagcaatggtttggaa cttaccttgttcc agtggtttcacaaactttcc caacaggttaagttcgttac acctt
17, 45% GC Probe # 18, 40% GC Probe # 19, 40% GC Probe
tgacgcctcttattggacgtagttgttcgcataatttctgtcccgagaaatcgacatgcgtacagggaaa actgcggagaataac acaagcgtattaaagacagg tctttagctgtacgcatgtc
# 20, 45% GC Probe # 21, 40% GC Probe # 22, 45% GC
atggactgcttattgttgccaataattcatctttctgtaaccctgttcttgtaatgtatatttgcgatcg tacctgacgaataacaacgg aagtagaaagacattgggac acgctagc Probe # 23, 45% GC Probe # 24, 40% GC Probe #
aatgaatttctctgaaaaagta ttacttaaagag 25, 40% GC
