User talk:Darek Kedra/sandbox 8

1. go to BioMart
2. click on BioMart Central Portal
3. Select database and species:
   1. CHOOSE DATABASE: ENSEMBL 50 VARIATION
   2. CHOOSE DATASET: Homo sapiens SNPs
4. Input list of SNPs to annotate
   1. click on Filters
   2. click on: [+] GENERAL SNP FILTERS:
   3. check box next to "Limit to SNPs with these IDs"
   4. cut and paste your list of SNPs in the text area (start with say 20, one per line as a test),
      1. OR use Browse for selecting _TEXT ONLY_ file containing SNP IDs one per line
5. top left: click on Count to check that your IDs are recognised
6. Select fields for output clicking on Attributes

The default colums included in the output are:

• Reference ID
• Chromosome name
• Position on Chromosome (bp)

If by chance any of your SNPs is a gene SNP then selecting: GENE SNP ATTRIBUTES: Ensembl Gene ID