User:SKaret/Notebook/GroupProj/MiBTutoriols

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Youtube Tutorial

The following tutorial has been followed:

https://www.youtube.com/watch?v=HW29067qVWk

Google Collab Link:

https://colab.research.google.com/drive/1eGJnRPphHbm7BgRvV-La8Q2lETjV33nd

Modelling in Biology Tutorials

The Modelling in Biology Tutorials will be completed using Jupyter Notebooks (Python). Notes and the code of this will be presented in this page.

Training 1

Google Collab link: https://colab.research.google.com/drive/1Zjgsy8su3sdlFMnpaQ0RPDJ7F15fE7e1

Notes: This notebook includes:

  • Defining a function for a simple ODE.
  • Using Odeint to solve the ODE.
  • Plotting the solution.
  • Changing the parameter/argument value and plotting for different Parameters.

Training 2

Google Collab Link: https://colab.research.google.com/drive/1Hk1OPSEp5cVVlfcPXn2vGhtRpCMfUCrt

Notes: This notebook includes:

  • Creating an array in Python.
  • Defining a function for a Euler's Method.
  • Comparing Numerical and Analytical Solution.


Training 3

Google Collab Link: https://colab.research.google.com/drive/1sAFkOcylAAxgAQn9f7S08WUypMAwldq2

Notes: This notebook includes:

  • Random no/trajectories generation
  • Plotting multiple trajectories on a curve

Training 4

Google Collab Link: https://colab.research.google.com/drive/1cex3f91O3VgEHihGan-mRYyy-iS2nVoR

Notes: This notebook includes:

  • Modelling of a genetic Toggle Switch