User:SKaret/Notebook/GroupProj/MiBTutoriols

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Youtube Tutorial

The following tutorial has been followed:

https://www.youtube.com/watch?v=HW29067qVWk

Google Collab Link:

https://colab.research.google.com/drive/1eGJnRPphHbm7BgRvV-La8Q2lETjV33nd

Modelling in Biology Tutorials

The Modelling in Biology Tutorials will be completed using Jupyter Notebooks (Python). Notes and the code of this will be presented in this page.

Training 1

Google Collab link: https://colab.research.google.com/drive/1Zjgsy8su3sdlFMnpaQ0RPDJ7F15fE7e1

Notes: This notebook includes:

• Defining a function for a simple ODE.
• Using Odeint to solve the ODE.
• Plotting the solution.
• Changing the parameter/argument value and plotting for different Parameters.

Training 2

Google Collab Link: https://colab.research.google.com/drive/1Hk1OPSEp5cVVlfcPXn2vGhtRpCMfUCrt

Notes: This notebook includes:

• Creating an array in Python.
• Defining a function for a Euler's Method.
• Comparing Numerical and Analytical Solution.

Training 3

Google Collab Link: https://colab.research.google.com/drive/1sAFkOcylAAxgAQn9f7S08WUypMAwldq2

Notes: This notebook includes:

• Random no/trajectories generation
• Plotting multiple trajectories on a curve

Training 4

Google Collab Link: https://colab.research.google.com/drive/1cex3f91O3VgEHihGan-mRYyy-iS2nVoR

Notes: This notebook includes:

• Modelling of a genetic Toggle Switch