User:Matthew Whiteside/Notebook/Fumigatus Microarray/Tasks/Task3
TASK3: Validate Microarray data
- SreA study is good validation | link
- gene order. In afum, it appears functionally-related genes are often clustered. Unlikely that adjacent genes are DE. developed basic gene order predictor based on locus ID ordering
- used p-value 0.05 for T test. more DE genes, more noise. Use above strategies to improve.
To Do List
- Obtain expression data from MeV project files for entire genome
- Look for positive controls - sidA. Is it upreg?
- Rerun A. nidulans metabolic analysis