User:Matthew Whiteside/Notebook/Fumigatus Microarray/Tasks/Task3

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TASK3: Validate Microarray data

Notes

  • SreA study is good validation | link
  • gene order. In afum, it appears functionally-related genes are often clustered. Unlikely that adjacent genes are DE. developed basic gene order predictor based on locus ID ordering
  • used p-value 0.05 for T test. more DE genes, more noise. Use above strategies to improve.

To Do List

  1. Obtain expression data from MeV project files for entire genome
    Entries
  2. Look for positive controls - sidA. Is it upreg?
    Entries
  3. Rerun A. nidulans metabolic analysis
    Entries