User:Matthew Whiteside/Notebook/Fumigatus Microarray/Tasks/Task3

TASK3: Validate Microarray data

Notes

• SreA study is good validation | link
• gene order. In afum, it appears functionally-related genes are often clustered. Unlikely that adjacent genes are DE. developed basic gene order predictor based on locus ID ordering
• used p-value 0.05 for T test. more DE genes, more noise. Use above strategies to improve.

To Do List

1. Obtain expression data from MeV project files for entire genome

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2. Look for positive controls - sidA. Is it upreg?

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3. Rerun A. nidulans metabolic analysis

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