User:Lindenb/Notebook/UMR915/20110427
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dbNSFP
lindenb@yokofakun:~$ wget "http://dl.dropbox.com/u/17001647/dbNSFP/dbNSFP.chr1-22XY.zip"
--2011-04-27 13:50:26-- http://dl.dropbox.com/u/17001647/dbNSFP/dbNSFP.chr1-22XY.zip
Proxy request sent, awaiting response... 200 OK
Length: 1200703405 (1.1G) [application/zip]
Saving to: `dbNSFP.chr1-22XY.zip'
100%[=================================================================================================================>] 1,200,703,405 1.82M/s in 10m 11s
2011-04-27 14:00:38 (1.87 MB/s) - `dbNSFP.chr1-22XY.zip' saved [1200703405/1200703405]
unzip -t dbNSFP.chr1-22XY.zip
Archive: dbNSFP.chr1-22XY.zip
testing: dbNSFP.chr1 OK
testing: dbNSFP.chr10 OK
testing: dbNSFP.chr11 OK
testing: dbNSFP.chr12 OK
testing: dbNSFP.chr13 OK
testing: dbNSFP.chr14 OK
testing: dbNSFP.chr15 OK
testing: dbNSFP.chr16 OK
testing: dbNSFP.chr17 OK
testing: dbNSFP.chr18 OK
testing: dbNSFP.chr19 OK
testing: dbNSFP.chr2 OK
testing: dbNSFP.chr20 OK
testing: dbNSFP.chr21 OK
testing: dbNSFP.chr22 OK
testing: dbNSFP.chr3 OK
testing: dbNSFP.chr4 OK
testing: dbNSFP.chr5 OK
testing: dbNSFP.chr6 OK
testing: dbNSFP.chr7 OK
testing: dbNSFP.chr8 OK
testing: dbNSFP.chr9 OK
testing: dbNSFP.chrX OK
testing: dbNSFP.chrY OK
No errors detected in compressed data of dbNSFP.chr1-22XY.zip.
unzip dbNSFP.chr1-22XY.zip dbNSFP.chr22
Archive: dbNSFP.chr1-22XY.zip
inflating: dbNSFP.chr22
ead dbNSFP.chr22
#chr pos(1-based) ref alt aaref aaalt hg19pos(1-based) genename geneid CCDSid refcodon codonpos fold-degenerate aapos cds_strand LRT_Omega PhyloP_score PlyloP_pred SIFT_score SIFT_pred Polyphen2_score Polyphen2_pred LRT_score LRT_pred MutationTaster_score MutationTaster_pred
22 15453440 T G M L 17073440 CCT8L2 150160 CCDS13738.1 ATG 1 0 1 - 1.116940 0.963611 C 1.0 D 0.25 P 0.419288 U 1.0 D
22 15453440 T C M V 17073440 CCT8L2 150160 CCDS13738.1 ATG 1 0 1 - 1.116940 0.963611 C 1.0 D 0.25 P 0.419288 U 1.0 D
22 15453440 T A M L 17073440 CCT8L2 150160 CCDS13738.1 ATG 1 0 1 - 1.116940 0.963611 C 1.0 D 0.25 P 0.419288 U 1.0 D
22 15453439 A T M K 17073439 CCT8L2 150160 CCDS13738.1 ATG 2 0 1 - 1.116940 0.763968 N 1.0 D 0.588 P 0.419288 U 1.0 D
22 15453439 A G M T 17073439 CCT8L2 150160 CCDS13738.1 ATG 2 0 1 - 1.116940 0.763968 N 1.0 D 0.588 P 0.419288 N 1.0 D
22 15453439 A C M R 17073439 CCT8L2 150160 CCDS13738.1 ATG 2 0 1 - 1.116940 0.763968 N 1.0 D 0.588 P 0.419288 N 1.0 D
22 15453438 C T M I 17073438 CCT8L2 150160 CCDS13738.1 ATG 3 0 1 - 1.116940 0.970895 C 1.0 D 0.25 P 0.419288 U 1.0 D
22 15453438 C G M I 17073438 CCT8L2 150160 CCDS13738.1 ATG 3 0 1 - 1.116940 0.970895 C 1.0 D 0.25 P 0.419288 U 1.0 D
22 15453438 C A M I 17073438 CCT8L2 150160 CCDS13738.1 ATG 3 0 1 - 1.116940 0.970895 C 1.0 D 0.25 P 0.419288 U 1.0 D
>>2
$1 #chr : 22
$2 pos(1-based) : 15453440
$3 ref : T
$4 alt : G
$5 aaref : M
$6 aaalt : L
$7 hg19pos(1-based) : 17073440
$8 genename : CCT8L2
$9 geneid : 150160
$10 CCDSid : CCDS13738.1
$11 refcodon : ATG
$12 codonpos : 1
$13 fold-degenerate : 0
$14 aapos : 1
$15 cds_strand : -
$16 LRT_Omega : 1.116940
$17 PhyloP_score : 0.963611
$18 PlyloP_pred : C
$19 SIFT_score : 1.0
$20 SIFT_pred : D
$21 Polyphen2_score : 0.25
$22 Polyphen2_pred : P
$23 LRT_score : 0.419288
$24 LRT_pred : U
$25 MutationTaster_score : 1.0
$26 MutationTaster_pred : D
<<2
>>3
$1 #chr : 22
$2 pos(1-based) : 15453440
$3 ref : T
$4 alt : C
$5 aaref : M
$6 aaalt : V
$7 hg19pos(1-based) : 17073440
$8 genename : CCT8L2
$9 geneid : 150160
$10 CCDSid : CCDS13738.1
$11 refcodon : ATG
$12 codonpos : 1
$13 fold-degenerate : 0
$14 aapos : 1
$15 cds_strand : -
$16 LRT_Omega : 1.116940
$17 PhyloP_score : 0.963611
$18 PlyloP_pred : C
$19 SIFT_score : 1.0
$20 SIFT_pred : D
$21 Polyphen2_score : 0.25
$22 Polyphen2_pred : P
$23 LRT_score : 0.419288
$24 LRT_pred : U
$25 MutationTaster_score : 1.0
$26 MutationTaster_pred : D
<<3
