User:Lindenb/Notebook/UMR915/20101203

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20101202        Top        20101206       


cleaning day.

belgium

get 1000G data: 

curl -s  --proxy cache.XXXXXXXXXXX:1111 "ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/2010_11/ALL.2of4intersection.20100804.sites.vcf.gz" | gunzip  -c |\
awk -F '    ' '{if(($1=="X1" && int($2)>=1 && int($2) <=2) || ($1=="X2" && int($2) >= 1  && int($2)<=2)) print $0;}'  > /home/lindenb/belgium.1000G.vcf

wc /home/lindenb/belgium.1000G.vcf 
  1810743  14485944 112524319 /home/lindenb/belgium.1000G.vcf
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