User:Lindenb/Notebook/UMR915/20101014
From OpenWetWare
- presentation Quentin
- improving sigframe
- asked snapshot from Integragen/Melanie
From http://biostar.stackexchange.com/questions/2903 , Brad Chapmans suggest http://bioinformatics.bc.edu/marthlab/GigaBayes as a SNP caller.
Belgium
Downloaded http://www.clcbio.com/index.php?id=1292 to get visible data for individual 1
Coverages
Individual 1:
Mean coverage 18,93 Total bases in targeted regions 3.456.979 1x 90,60% 5x 68,09% 10x 49,68% 20x 33,75% 40x 16,28% 80x 0,76% 100x 0,07%
Individual 2:
primary_target_region coverage report.pdf
Mean coverage 34,81 Total bases in targeted regions 3.456.979 1x 96,76% 5x 88,27% 10x 73,18% 20x 51,10% 40x 33,79% 80x 12,34% 100x 4,28%
capture_target coverage report.pdf
Mean coverage 27,67 Total bases in targeted regions 5.085.943 1x 92,46% 5x 79,76% 10x 63,03% 20x 41,00% 40x 24,52% 80x 8,54% 100x 2,95%