User:Lindenb/Notebook/UMR915/20101008

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Charpak

updated the "view BAM" feature, saving as PNG instead of HTML (lighter) http://code.google.com/p/code915/source/browse/trunk/charpak/src/WEB-INF/src/fr/inserm/umr915/charpak/j2ee/BamAction.java


CharpakViewBam.png

Belgium

header of CSV file is


    1	"Mapping"
    2	"Reference position"
    3	"Consensus position"
    4	"Variation type"
    5	"Length"
    6	"Reference"
    7	"Variants"
    8	"Allele variations"
    9	"Frequencies"
   10	"Counts"
   11	"Coverage"
   12	"Variant #1"
   13	"Frequency of #1"
   14	"Count of #1"
   15	"Variant #2"
   16	"Frequency of #2"
   17	"Count of #2"
   18	"Overlapping annotations"
   19	"Amino acid change"