User:Jie Lyu

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Contact Info

Jie Lyu (an artistic interpretation)

• Jie Lyu
• Baylor College of Medicine
• One Baylor Plaza, 529DB
• Houston, TX 77030
• Email me through OpenWetWare

I am a PostDoctoral Associate at Baylor College of Medicine. I learned about OpenWetWare from Wei Li.

Education

• Sep, 2011—July, 2015, PhD, Harbin Institute of Technology
• Sep, 2008—June, 2011, MS, Harbin Medical University
• Sep, 2003—June, 2008, BS, Harbin Medical University

Research interests

1. Non-coding RNA identification
2. Epigenomic data analysis
3. Epigenomic database construction

Publications

1. J., Cui W., Liu H.B., He H., Xiu Y., Guo J., Liu H., Liu Q., Zeng T., Chen Y., Zhang Y., Wu Q.*: Identification and Characterization of Long Non-Coding RNAs Related to Mouse Embryonic Brain Development from Available Transcriptomic Data. PLoS ONE, 2013, 8(8):e71152 pmid=23967161

1. J., Huang Z., Liu H., Liu H.B., Cui W., Li B., He H., Guo J., Liu Q., Zhang Y., Wu Q.*: Identification and characterization of long intergenic non-coding RNAs related to mouse liver development. Molecular Genetics and Genomics, 2014, 289(6):1225-35 pmid=25012394

1. J., Liu H., Su J., Wu X., Li B., Xiao X., Wang F., Wu Q.*, Zhang Y.*: DiseaseMeth: a human disease methylation database. Nucleic Acids Research, 2012, 40:D1030-1035 pmid=22135302

1. J., Liu H., Yu S., Liu H.B., Cui W., Gao Y., Zheng T., Qin G., Guo J., Zeng T., Han Z., Zhang Y., Wu Q.*: Identification of 4438 novel lincRNAs involved in mouse pre-implantation embryonic development. Molecular Genetics and Genomics, 2014, 290(2):685-97 pmid=25428585

1. J., Liu H.B., Huang Z., Su J., He H., Xiu Y., Zhang Y., Wu Q.*: Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features. Nucleic Acids Research, 2013, 41 (22):10044-10061 pmid=24038472

   Representative paper

1. J., Qiao H., Liu H.B., Xiao X., Zhu J., Su J., Wang F., Cui Y., Wu X., Zhang Y.*: Discovering Cooperative Relationships of Chromatin Modifications in Human T Cells Based on a Proposed Closeness Measure. PLoS ONE, 2010, 5(12),e14219 pmid=21151929

1. J., Su J., Wang F., Qi Y., Liu H., Zhang Y.*: Detecting Novel Hypermethylated Genes in Human Breast Cancer Benefiting from Feature Selection. Computers in Biology and Medicine, 2010, 40(2),159-167 pmid=20044084

2. Y.*, Lv J. (co-first author), Liu H.B., Zhu J., Su J., Wu Q., Qi Y., Wang F., Li X.*: HHMD: the human histone modification database. Nucleic Acids Research, 2010, 38 database issue, D149-D154 pmid=19892823

Useful links

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