User:Jarle Pahr/Variant calling
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Notes on variant calling from sequence data:
http://petridishtalk.com/2013/02/01/variant-discovery-annotation-filtering-with-samtools-the-gatk/
Software:
http://seqanswers.com/wiki/VarScan
http://sourceforge.net/projects/varscan/?source=directory
Pibase: