User:Jarle Pahr/Variant calling

Notes on variant calling from sequence data:

http://www.homolog.us/blogs/blog/2013/06/05/academic-bioinformaticians-uncomfortable-with-illuminas-publication-of-variant-caller/

http://petridishtalk.com/2013/02/01/variant-discovery-annotation-filtering-with-samtools-the-gatk/

Software:

http://seqanswers.com/wiki/VarScan

http://sourceforge.net/projects/varscan/?source=directory

Pibase:

http://www.ncbi.nlm.nih.gov/pubmed/22965131?dopt=Abstract