User:Jarle Pahr/Motifs

From OpenWetWare
Jump to: navigation, search

Shen-Orr, Alon, et al. Network motifs in the transcriptional regulation network of Escherichia coli: http://www.nature.com/ng/journal/v31/n1/abs/ng881.html


(2002) Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback, and bistability. Curr Opin Cell Biol 14:140–148


Brandman O, et al. Interlinked fast and slow positive feedback loops drive reliable cell decisions. Science 2005;310:496-498.

Ferrell JE Jr., Machleder EM. The biochemical basis of an all-or-none cell fate switch in xenopus oocytes. Science 1998;280:895-898.

Kalir S, et al. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol. Syst. Biol. 2005. 1, 2005.0006.

Kim JR, et al. Coupled feedback loops form dynamic motifs of cellular networks. Biophys. J. 2008;94:359-365.


Kremling A, et al. A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake. Bioinformatics 2008;24:704-710


Kwon YK, Cho KH. Boolean dynamics of biological networks with multiple coupled feedback loops. Biophys. J. 2007;92:2975-2981.


Coherent coupling of feedback loops: A design principle of cell signaling networks. Bioinformatics 2008a;24:1926-1932.

Mangan S, et al. The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. J. Mol. Biol. 2003;334:197-204.


Tsai TYC, et al.. Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science 2008;321:126-129


Xiong, W. & Ferrell, J. E. Jr A positive-feedback-based bistable 'memory module' that governs a cell fate decision. Nature 426, 460–465