User:Jarle Pahr/HTS
Notes on High-Throughput Sequencing (AKA "NGS"):
NGS Spreadsheet: https://docs.google.com/spreadsheet/ccc?key=0AvaxS3m5rl-9dHdtUGRtaGlsZWNFNWJleDRXaUhQTHc#gid=0
http://biomickwatson.wordpress.com/2013/01/21/ten-things-to-consider-when-choosing-an-ngs-supplier/
http://core-genomics.blogspot.no/2012/10/how-to-do-better-ngs-experiments.html
Software
https://genohub.com/shop/proj/
Gambit: http://seqanswers.com/wiki/Gambit
http://bioinformatics.udel.edu/CoreCenter/NGS/tools
https://wiki.nbic.nl/index.php/NGS_Tools
http://dna.engr.uconn.edu/?page_id=110
Software packages for NGS: http://seqanswers.com/forums/showthread.php?t=43
LookSeq: http://www.sanger.ac.uk/resources/software/lookseq/
Prinseq: http://sourceforge.net/projects/prinseq/?source=directory
NGS tools for the novice. http://sourceforge.net/projects/ngs-toolbox/files/
Resources
https://wiki.nbic.nl/index.php/Next_Generation_Sequencing
Companies
Slides and presentations
Blogs
www.nextgenseek.com
Bibliography
SeqAnswers literature section: http://seqanswers.com/forums/forumdisplay.php?f=10
http://link.springer.com/book/10.1007/978-1-62703-514-9/page/1
Unraveling genomic variation from next generation sequencing data: http://www.biodatamining.org/content/6/1/13