User:Jarle Pahr/HTS

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Notes on High-Throughput Sequencing (AKA "NGS"):

NGS Spreadsheet: https://docs.google.com/spreadsheet/ccc?key=0AvaxS3m5rl-9dHdtUGRtaGlsZWNFNWJleDRXaUhQTHc#gid=0

http://ngsbioinformatics.com/

http://biomickwatson.wordpress.com/2013/01/21/ten-things-to-consider-when-choosing-an-ngs-supplier/

http://core-genomics.blogspot.no/2012/10/how-to-do-better-ngs-experiments.html

Software

https://genohub.com/shop/proj/

Gambit: http://seqanswers.com/wiki/Gambit

http://bioinformatics.udel.edu/CoreCenter/NGS/tools

https://wiki.nbic.nl/index.php/NGS_Tools

http://dna.engr.uconn.edu/?page_id=110

Software packages for NGS: http://seqanswers.com/forums/showthread.php?t=43

LookSeq: http://www.sanger.ac.uk/resources/software/lookseq/


Prinseq: http://sourceforge.net/projects/prinseq/?source=directory


NGS tools for the novice. http://sourceforge.net/projects/ngs-toolbox/files/

Resources

https://wiki.nbic.nl/index.php/Next_Generation_Sequencing

Companies

http://nextgenseek.com/2012/11/did-you-know-there-are-at-least-14-next-gen-sequence-technology-companies/


Slides and presentations

http://www.slideshare.net/c.titus.brown/talk-at-bioinformatics-open-source-conference-2012?from_search=8

Blogs

http://ngs-expert.com/

www.nextgenseek.com

http://www.yuzuki.org/

Bibliography

SeqAnswers literature section: http://seqanswers.com/forums/forumdisplay.php?f=10

http://link.springer.com/book/10.1007/978-1-62703-514-9/page/1


Unraveling genomic variation from next generation sequencing data: http://www.biodatamining.org/content/6/1/13