User:Jarle Pahr/Genome browsers

Notes on software for visualizing & browsing genomes/sequencing data:

TGAC Browser: http://tgac-browser.tgac.ac.uk/

Integrate Genome Browser: http://en.wikipedia.org/wiki/Integrated_Genome_Browser

http://seqanswers.com/wiki/GenomeBrowse

http://seqanswers.com/wiki/HawkEye

Chromosoom: http://chromozoom.org/

Genomeview: http://genomeview.org/

http://sourceforge.net/projects/genomeview/?source=directory

Jbrowse: http://gmod.org/wiki/JBrowse

Gbrowse: http://gmod.org/wiki/GBrowse

Gbrowse NGS tutorial: http://gmod.org/wiki/GBrowse_NGS_Tutorial

Jbrowse: http://jbrowse.org/

UCSC Genome Browser: http://genome.ucsc.edu/

http://genome.ucsc.edu/training.html

http://www.omixon.com/bioinformatics-for-beginners-the-ucsc-genome-browser/

UCSC genome browser tutorial. Genomics, 2008: http://www.ncbi.nlm.nih.gov/pubmed/18514479

Seeker: http://www.nextgenetics.net/tools/browser/browser.html

STAR: http://bioinformatics.oxfordjournals.org/content/early/2013/09/27/bioinformatics.btt558.short?rss=1