User:Jarle Pahr/Databases
A list of databases in the life sciences, especially bioinformatics, molecular biology and systems biology:
Genetics and Genomics
Genecards: http://www.genecards.org/
See also http://en.wikipedia.org/wiki/List_of_biological_databases
NIH databases: http://www.nlm.nih.gov/NIHbmic/nih_data_sharing_repositories.html
http://en.wikipedia.org/wiki/Portal:Gene_Wiki
http://www.ncbi.nlm.nih.gov/pubmed/22541597
GenBank: http://www.ncbi.nlm.nih.gov/genbank/
SNPedia: http://www.snpedia.com/index.php/SNPedia
dbSNP:
See http://en.wikipedia.org/wiki/DbSNP
- Every submitted variation receives a submitted SNP ID number (“ss#”)
- Identical SNPs are merged and given a reference SNP ID number (“rs#”; "refSNP cluster")
See also: http://www.ncbi.nlm.nih.gov/books/NBK21088/
GOLD - Genomes Online Database: http://www.genomesonline.org/cgi-bin/GOLD/index.cgi
dbNSFP: http://onlinelibrary.wiley.com/doi/10.1002/humu.22376/abstract
https://sites.google.com/site/jpopgen/dbNSFP
Systems Biology
http://www.reactome.org/ReactomeGWT/entrypoint.html
Microbiology and Taxonomy
BioCyc
EcoCyc: http://www.ecocyc.org/
EcoliWiki: http://www.ecoliwiki.net/
Encyclopedia of life: http://eol.org/
WikiSpecies: http://species.wikimedia.org/wiki/Main_Page
Misc
BioNumbers: http://bionumbers.hms.harvard.edu/
Encyclopedia of Life Sciences: http://www.els.net
GigaDB: http://gigadb.org/
