User:Jarle Pahr/Bowtie

Notes on the Bowtie aligner:

http://bowtie-bio.sourceforge.net/index.shtml

https://github.com/BenLangmead/bowtie

Bowtie 2: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml

http://www.molecularevolution.org/resources/activities/velvet_and_bowtie_activity

Bibliography

Fast gapped-read alignment with Bowtie 2:

http://www.nature.com/nmeth/journal/v9/n4/full/nmeth.1923.html