User:Charles Addo-Quaye

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Contact Info

Charles Addo-Quaye (an artistic interpretation)
  • Charles Addo-Quaye
  • Purdue University
  • Department of Horticulture and Landscape Architecture
  • 625 Agricultural Mall Drive
  • West Lafayette, IN 47907
  • Email me through OpenWetWare

I work in the Dilkes at Purdue University. I learned about OpenWetWare from the web, and joined to interact with the scientific community.

Education

  • 2009, PhD, Pennsylvania State University
  • 2007, MS, Pennsylvania State University
  • 2001, MS*, Youngstown State University
  • 1997, BS, University of Ghana, Legon

Research interests

  1. Computational methods for high-confidence SNPs discovery in plants
  2. Gene discovery and functional genomics in crop species
  3. Plant and aphid small RNAs
  4. Plant Genomics


Publications

  1. Sattar S, Addo-Quaye C, Song Y, Anstead JA, Sunkar R, and Thompson GA. Expression of small RNA in Aphis gossypii and its potential role in the resistance interaction with melon. PLoS One. 2012;7(11):e48579. DOI:10.1371/journal.pone.0048579 | PubMed ID:23173035 | HubMed [paper1]
  2. Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang W, and Sunkar R. Transcriptome-wide identification of microRNA targets in rice. Plant J. 2010 Jun 1;62(5):742-59. DOI:10.1111/j.1365-313X.2010.04187.x | PubMed ID:20202174 | HubMed [paper2]
  3. Addo-Quaye C, Snyder JA, Park YB, Li YF, Sunkar R, and Axtell MJ. Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome. RNA. 2009 Dec;15(12):2112-21. DOI:10.1261/rna.1774909 | PubMed ID:19850910 | HubMed [paper3]
  4. Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, and Axtell MJ. Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development. PLoS Genet. 2008 Dec;4(12):e1000314. DOI:10.1371/journal.pgen.1000314 | PubMed ID:19096705 | HubMed [paper4]
  5. Addo-Quaye C, Miller W, and Axtell MJ. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Bioinformatics. 2009 Jan 1;25(1):130-1. DOI:10.1093/bioinformatics/btn604 | PubMed ID:19017659 | HubMed [paper5]
  6. Addo-Quaye C, Eshoo TW, Bartel DP, and Axtell MJ. Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol. 2008 May 20;18(10):758-762. DOI:10.1016/j.cub.2008.04.042 | PubMed ID:18472421 | HubMed [paper6]
  7. Rhesus Macaque Genome Sequencing and Analysis Consortium., Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, Hardison RC, Makova KD, Miller W, Milosavljevic A, Palermo RE, Siepel A, Sikela JM, Attaway T, Bell S, Bernard KE, Buhay CJ, Chandrabose MN, Dao M, Davis C, Delehaunty KD, Ding Y, Dinh HH, Dugan-Rocha S, Fulton LA, Gabisi RA, Garner TT, Godfrey J, Hawes AC, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Kirkness EF, Cree A, Fowler RG, Lee S, Lewis LR, Li Z, Liu YS, Moore SM, Muzny D, Nazareth LV, Ngo DN, Okwuonu GO, Pai G, Parker D, Paul HA, Pfannkoch C, Pohl CS, Rogers YH, Ruiz SJ, Sabo A, Santibanez J, Schneider BW, Smith SM, Sodergren E, Svatek AF, Utterback TR, Vattathil S, Warren W, White CS, Chinwalla AT, Feng Y, Halpern AL, Hillier LW, Huang X, Minx P, Nelson JO, Pepin KH, Qin X, Sutton GG, Venter E, Walenz BP, Wallis JW, Worley KC, Yang SP, Jones SM, Marra MA, Rocchi M, Schein JE, Baertsch R, Clarke L, Csürös M, Glasscock J, Harris RA, Havlak P, Jackson AR, Jiang H, Liu Y, Messina DN, Shen Y, Song HX, Wylie T, Zhang L, Birney E, Han K, Konkel MK, Lee J, Smit AF, Ullmer B, Wang H, Xing J, Burhans R, Cheng Z, Karro JE, Ma J, Raney B, She X, Cox MJ, Demuth JP, Dumas LJ, Han SG, Hopkins J, Karimpour-Fard A, Kim YH, Pollack JR, Vinar T, Addo-Quaye C, Degenhardt J, Denby A, Hubisz MJ, Indap A, Kosiol C, Lahn BT, Lawson HA, Marklein A, Nielsen R, Vallender EJ, Clark AG, Ferguson B, Hernandez RD, Hirani K, Kehrer-Sawatzki H, Kolb J, Patil S, Pu LL, Ren Y, Smith DG, Wheeler DA, Schenck I, Ball EV, Chen R, Cooper DN, Giardine B, Hsu F, Kent WJ, Lesk A, Nelson DL, O'brien WE, Prüfer K, Stenson PD, Wallace JC, Ke H, Liu XM, Wang P, Xiang AP, Yang F, Barber GP, Haussler D, Karolchik D, Kern AD, Kuhn RM, Smith KE, and Zwieg AS. Evolutionary and biomedical insights from the rhesus macaque genome. Science. 2007 Apr 13;316(5822):222-34. DOI:10.1126/science.1139247 | PubMed ID:17431167 | HubMed [paper7]
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