User:Carl Boettiger/Notebook/Comparative Phylogenetics/2010/04/30

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Adaptive Dynamics

  • Modified code phase definitions: phasetime[0] is the first time dimorphism is established. Dimorphism may be lost and restablished, last (most recent) time it establishes is phasetime[1] (used to be phasetime[0]). Other times are still the most recent time at which the phase was accomplished.
  • Fiddling with analytic approximations. These shouldn't integrate to evaluate at each value, but should be done in a fully discretized system. Prototyping in R, the discrete version is probably fast enough to handle in scripted code alone.