User:Carl Boettiger/Notebook/Comparative Phylogenetics/2010/04/02

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Graham & Peter Meeting

Fig 1
Fig 2
  • Decided that bootstrapping against fixed model parameters would be more difficult to interpret, Fig 1.
  • Simulated data results with refitting seem strange (Fig. 2), perhaps related to fitting of the tree. Observed LR for data should at least remain symmetric, so something has gone wrong.
  • Expected pattern should be deducible simply by upper left triangle of graphs, should accept the first model where the data becomes typical.