Talk:Streptomyces:Publications

Toggle and Biblio

I thought this might be a useful example of my publication display using toggle and biblio extensions.

Taken from OpenWetWare:Toggle

Multiple

• item1
• item2
• toggle item1
• toggle item2
• toggle both items

* {{toggle|item1||item1 item}}
* {{toggle|item2||item2 item}}
* <span class="_toggler-item1">toggle item1</span>
* <span class="_toggler-item2">toggle item2</span>
* <span class="_toggler-item">toggle both items</span>

Taken from Template:Toggle

{{{1}}}

{{{2}}}

<div class="_toggle {{{3|}}}">{{{1}}}</div>
<div class="_toggle {{{3|}}}" style="display:none;">{{{2}}}</div>

My understanding and usage of Toggle with the template

<span class="_toggler-item1">toggle item1</span>
<span class="_toggler-item2">toggle item2</span>
<span class="_toggler-item">toggle both items</span>

• The text item1 after toggler- is a reference name to the text/link/biblio/item you want to toggle.
• The text between the brackets >toggle item1< is the text that shows on the wiki page.

{{toggle|item1||item1 item}}
{{toggle|item2||item2 item}}

• The text item1 after toggle| is whatever text/link/biblio/item you want to toggle.
• The text item1 after || should be the same reference from the class line, <span class="_toggler-item1"&#62toggle item1</span>
• The text item is another reference to enable all the objects containing the same reference to be toggled together.
• The code {{toggle means that the display text and the text/link/biblio/item, are passed into the template for parsing.

• The | enables the data to be sent to particular parts of the template.

<div class="_toggle {{{3|}}}">{{{1}}}</div>
<div class="_toggle {{{3|}}}" style="display:none;">{{{2}}}</div>

• The numbers 1 and 2 in the brackets receive the text/link/biblio/item to be toggled.
• The number 3 in brackets receives the reference names, i.e. |%#124;item1 item}}
• By using the code {{toggle|item1||item1 item}} the text/link/biblio/item to be toggled is automatically on show.
• If you want the default setting to for the text/link/biblio/item to be hidden by default, use the following:

{{toggle||item1|item1 item}}

• Note the change in position of the vertical bar, which sends the data to different section of the template to be handled and therefore has a different output (hidden).

Example

<span class="_toggler-Kelemen">2000 - Present</span>
<span class="_toggler-KelemenPre2000">Pre 2000</span> 
<span class="_toggler-List">Toggle Lists</span>

{{toggle|<biblio> #[[Streptomyces:PublicationsKelemenList]]</biblio>||Kelemen List}}
{{toggle||<biblio> #[[Streptomyces:PublicationsKelemenListPre2000]]</biblio>|KelemenPre2000 List}}

2000 - Present Pre 2000 Toggle Lists

1. Gaskell AA, Crack JC, Kelemen GH, Hutchings MI, and Le Brun NE. RsmA is an anti-sigma factor that modulates its activity through a [2Fe-2S] cluster cofactor. J Biol Chem. 2007 Oct 26;282(43):31812-20. DOI:10.1074/jbc.M705160200 |
2. Dalton KA, Thibessard A, Hunter JI, and Kelemen GH. A novel compartment, the 'subapical stem' of the aerial hyphae, is the location of a sigN-dependent, developmentally distinct transcription in Streptomyces coelicolor. Mol Microbiol. 2007 May;64(3):719-37. DOI:10.1111/j.1365-2958.2007.05684.x |
3. Hunt AC, Servín-González L, Kelemen GH, and Buttner MJ. The bldC developmental locus of Streptomyces coelicolor encodes a member of a family of small DNA-binding proteins related to the DNA-binding domains of the MerR family. J Bacteriol. 2005 Jan;187(2):716-28. DOI:10.1128/JB.187.2.716-728.2005 |
4. Traag BA, Kelemen GH, and Van Wezel GP. Transcription of the sporulation gene ssgA is activated by the IclR-type regulator SsgR in a whi-independent manner in Streptomyces coelicolor A3(2). Mol Microbiol. 2004 Aug;53(3):985-1000. DOI:10.1111/j.1365-2958.2004.04186.x |
5. Viollier PH, Kelemen GH, Dale GE, Nguyen KT, Buttner MJ, and Thompson CJ. Specialized osmotic stress response systems involve multiple SigB-like sigma factors in Streptomyces coelicolor. Mol Microbiol. 2003 Feb;47(3):699-714. DOI:10.1046/j.1365-2958.2003.03302.x |
6. Kelemen GH, Viollier PH, Tenor J, Marri L, Buttner MJ, and Thompson CJ. A connection between stress and development in the multicellular prokaryote Streptomyces coelicolor A3(2). Mol Microbiol. 2001 May;40(4):804-14. DOI:10.1046/j.1365-2958.2001.02417.x |

7. Sun J, Kelemen GH, Fernández-Abalos JM, and Bibb MJ. Green fluorescent protein as a reporter for spatial and temporal gene expression in Streptomyces coelicolor A3(2). Microbiology (Reading). 1999 Sep;145 ( Pt 9):2221-2227. DOI:10.1099/00221287-145-9-2221 |
8. Kelemen GH and Buttner MJ. Initiation of aerial mycelium formation in Streptomyces. Curr Opin Microbiol. 1998 Dec;1(6):656-62. DOI:10.1016/s1369-5274(98)80111-2 |
9. Ryding NJ, Kelemen GH, Whatling CA, Flärdh K, Buttner MJ, and Chater KF. A developmentally regulated gene encoding a repressor-like protein is essential for sporulation in Streptomyces coelicolor A3(2). Mol Microbiol. 1998 Jul;29(1):343-57. DOI:10.1046/j.1365-2958.1998.00939.x |
10. Kelemen GH, Brian P, Flärdh K, Chamberlin L, Chater KF, and Buttner MJ. Developmental regulation of transcription of whiE, a locus specifying the polyketide spore pigment in Streptomyces coelicolor A3 (2). J Bacteriol. 1998 May;180(9):2515-21. DOI:10.1128/JB.180.9.2515-2521.1998 |
11. Kelemen GH, Brown GL, Kormanec J, Potúcková L, Chater KF, and Buttner MJ. The positions of the sigma-factor genes, whiG and sigF, in the hierarchy controlling the development of spore chains in the aerial hyphae of Streptomyces coelicolor A3(2). Mol Microbiol. 1996 Aug;21(3):593-603. DOI:10.1111/j.1365-2958.1996.tb02567.x |
12. Kelemen GH, Plaskitt KA, Lewis CG, Findlay KC, and Buttner MJ. Deletion of DNA lying close to the glkA locus induces ectopic sporulation in Streptomyces coelicolor A3(2). Mol Microbiol. 1995 Jul;17(2):221-30. DOI:10.1111/j.1365-2958.1995.mmi_17020221.x |
13. Potúcková L, Kelemen GH, Findlay KC, Lonetto MA, Buttner MJ, and Kormanec J. A new RNA polymerase sigma factor, sigma F, is required for the late stages of morphological differentiation in Streptomyces spp. Mol Microbiol. 1995 Jul;17(1):37-48. DOI:10.1111/j.1365-2958.1995.mmi_17010037.x |
14. Kelemen GH, Zalacain M, Culebras E, Seno ET, and Cundliffe E. Transcriptional attenuation control of the tylosin-resistance gene tlrA in Streptomyces fradiae. Mol Microbiol. 1994 Nov;14(4):833-42. DOI:10.1111/j.1365-2958.1994.tb01319.x |
15. Kelemen GH, Cundliffe E, and Financsek I. Cloning and characterization of gentamicin-resistance genes from Micromonospora purpurea and Micromonospora rosea. Gene. 1991 Feb 1;98(1):53-60. DOI:10.1016/0378-1119(91)90103-i |
16. Kelemen GH, Financsek I, and Járai M. Efficient transformation of Micromonospora purpurea with pIJ702 plasmid. J Antibiot (Tokyo). 1989 Feb;42(2):325-8. DOI:10.7164/antibiotics.42.325 |

• Alternativly, you don't have to refer to the template, you can import the code and use it directly. For example:

<span class="_toggler-Kelemen">Toggle 2000 - Present</span>
<span class="_toggler-KelemenPre2000">Toggle Pre 2000</span>
<span class="_toggler-List">Toggle Lists</span>
<br>
<div class="_toggle Kelemen List"><biblio> #[[Streptomyces:PublicationsKelemenList]]</biblio></div>
<div class="_toggle KelemenPre2000 List" style="display:none;"><biblio> #[[Streptomyces:PublicationsKelemenListPre2000]]</biblio></div>

Toggle 2000 - Present Toggle Pre 2000 Toggle Lists

1. Gaskell AA, Crack JC, Kelemen GH, Hutchings MI, and Le Brun NE. RsmA is an anti-sigma factor that modulates its activity through a [2Fe-2S] cluster cofactor. J Biol Chem. 2007 Oct 26;282(43):31812-20. DOI:10.1074/jbc.M705160200 |
2. Dalton KA, Thibessard A, Hunter JI, and Kelemen GH. A novel compartment, the 'subapical stem' of the aerial hyphae, is the location of a sigN-dependent, developmentally distinct transcription in Streptomyces coelicolor. Mol Microbiol. 2007 May;64(3):719-37. DOI:10.1111/j.1365-2958.2007.05684.x |
3. Hunt AC, Servín-González L, Kelemen GH, and Buttner MJ. The bldC developmental locus of Streptomyces coelicolor encodes a member of a family of small DNA-binding proteins related to the DNA-binding domains of the MerR family. J Bacteriol. 2005 Jan;187(2):716-28. DOI:10.1128/JB.187.2.716-728.2005 |
4. Traag BA, Kelemen GH, and Van Wezel GP. Transcription of the sporulation gene ssgA is activated by the IclR-type regulator SsgR in a whi-independent manner in Streptomyces coelicolor A3(2). Mol Microbiol. 2004 Aug;53(3):985-1000. DOI:10.1111/j.1365-2958.2004.04186.x |
5. Viollier PH, Kelemen GH, Dale GE, Nguyen KT, Buttner MJ, and Thompson CJ. Specialized osmotic stress response systems involve multiple SigB-like sigma factors in Streptomyces coelicolor. Mol Microbiol. 2003 Feb;47(3):699-714. DOI:10.1046/j.1365-2958.2003.03302.x |
6. Kelemen GH, Viollier PH, Tenor J, Marri L, Buttner MJ, and Thompson CJ. A connection between stress and development in the multicellular prokaryote Streptomyces coelicolor A3(2). Mol Microbiol. 2001 May;40(4):804-14. DOI:10.1046/j.1365-2958.2001.02417.x |

7. Sun J, Kelemen GH, Fernández-Abalos JM, and Bibb MJ. Green fluorescent protein as a reporter for spatial and temporal gene expression in Streptomyces coelicolor A3(2). Microbiology (Reading). 1999 Sep;145 ( Pt 9):2221-2227. DOI:10.1099/00221287-145-9-2221 |
8. Kelemen GH and Buttner MJ. Initiation of aerial mycelium formation in Streptomyces. Curr Opin Microbiol. 1998 Dec;1(6):656-62. DOI:10.1016/s1369-5274(98)80111-2 |
9. Ryding NJ, Kelemen GH, Whatling CA, Flärdh K, Buttner MJ, and Chater KF. A developmentally regulated gene encoding a repressor-like protein is essential for sporulation in Streptomyces coelicolor A3(2). Mol Microbiol. 1998 Jul;29(1):343-57. DOI:10.1046/j.1365-2958.1998.00939.x |
10. Kelemen GH, Brian P, Flärdh K, Chamberlin L, Chater KF, and Buttner MJ. Developmental regulation of transcription of whiE, a locus specifying the polyketide spore pigment in Streptomyces coelicolor A3 (2). J Bacteriol. 1998 May;180(9):2515-21. DOI:10.1128/JB.180.9.2515-2521.1998 |
11. Kelemen GH, Brown GL, Kormanec J, Potúcková L, Chater KF, and Buttner MJ. The positions of the sigma-factor genes, whiG and sigF, in the hierarchy controlling the development of spore chains in the aerial hyphae of Streptomyces coelicolor A3(2). Mol Microbiol. 1996 Aug;21(3):593-603. DOI:10.1111/j.1365-2958.1996.tb02567.x |
12. Kelemen GH, Plaskitt KA, Lewis CG, Findlay KC, and Buttner MJ. Deletion of DNA lying close to the glkA locus induces ectopic sporulation in Streptomyces coelicolor A3(2). Mol Microbiol. 1995 Jul;17(2):221-30. DOI:10.1111/j.1365-2958.1995.mmi_17020221.x |
13. Potúcková L, Kelemen GH, Findlay KC, Lonetto MA, Buttner MJ, and Kormanec J. A new RNA polymerase sigma factor, sigma F, is required for the late stages of morphological differentiation in Streptomyces spp. Mol Microbiol. 1995 Jul;17(1):37-48. DOI:10.1111/j.1365-2958.1995.mmi_17010037.x |
14. Kelemen GH, Zalacain M, Culebras E, Seno ET, and Cundliffe E. Transcriptional attenuation control of the tylosin-resistance gene tlrA in Streptomyces fradiae. Mol Microbiol. 1994 Nov;14(4):833-42. DOI:10.1111/j.1365-2958.1994.tb01319.x |
15. Kelemen GH, Cundliffe E, and Financsek I. Cloning and characterization of gentamicin-resistance genes from Micromonospora purpurea and Micromonospora rosea. Gene. 1991 Feb 1;98(1):53-60. DOI:10.1016/0378-1119(91)90103-i |
16. Kelemen GH, Financsek I, and Járai M. Efficient transformation of Micromonospora purpurea with pIJ702 plasmid. J Antibiot (Tokyo). 1989 Feb;42(2):325-8. DOI:10.7164/antibiotics.42.325 |

---