Talk:20.109(S15):Phylogentic analysis (Day8)
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Upload alignment files here
All birds MEGA file + extra data from S14 (birds 312, 290, 274): MEGA file
ID Files that correspond to MEGA file above: ID file with spaces
ID file without spaces
Name your alignment file according to this example: WF-TeamColor-alignment-FINAL
| T/R Groups | Final MEGA File (upload .mas file) |
| Orange | TR302 |
| Yellow | |
| Green | TR50 |
| Blue | TR58 |
| Purple | 6TR2 |
| W/F Groups | Final MEGA File (upload .mas file) |
| Red | 040 revised 3.8.15 at 2:30pm |
| Orange | 040/274 |
| Yellow | 274 |
| Green | 050/274 |
| Blue | 058/274 MEGA File 058/274 NWK File 058/274 Tree Image Update:3/8 at 10:30am -- .mas bird 274 only Update: 3/8 at 10:30am -- .mas bird 58 only + updated names of bacteria strains |
| Pink | 290 |
| Purple | Media:WFPrp040_274.mas |
| Platinum | media:Pt_WF_312_v2.mas |
Upload sequence files here
| T/R Team Color | Gull ID | Sequence 1 (txt) | Sequence 2 (txt) | Sequence 3 (txt) | Sequence 4 (txt) | Sequence 5 (txt) | Sequence 6 (txt) | Sequence 7 (txt) | Sequence 8 (txt) | Sequence 9 (txt) | Species overview (xlsx) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Orange | 302 | Bird302.C16 | Bird302.C6 | Bird302.C4 | Bird302.14 | Bird302.C13 | Bird302.C15 | Bird302.C11 | Bird302.C7 | Bird302.C8 | TROrange302.xlsx |
| Yellow | |||||||||||
| Green | 50 | 50.C1 | 50.C2; v2 - fixed sequence | 50.C3 | 50.C4 | Bird50.C5 | Bird50.C8 | Bird50.C9 | Bird50.C10 | Greenbird50 | |
| Blue | 58 | Bird58.C1 | Bird58.C2 | Bird58.C4 | Bird58.C5 | Bird58.C9 | Bird58.C11 | Bird58.C13 | Bird58.C15 | Bird58.C16 | media:TRBlu58-SHEET.ex.xlsx |
| Purple | 62 | 62.C12 | 62.C1 | 62.C9 | 62.C15 | 62.C18 | 62.C14 | Bird62.C11 | Bird62.C13 | Bird62.C8 | TRPrp62 |
