Strobel:Journal Club
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RNA
July 26, 2012
- Rob: The anti-Shine–Dalgarno sequence drives translational pausing and codon choice in bacteria. PMID 22456704
Karen: A highly specialized flavin mononucleotide riboswitch responds differently to similar ligands and confers roseoflavin resistance to Streptomyces davawensis http://nar.oxfordjournals.org/content/early/2012/06/26/nar.gks616.abstract?sid=9eb33ea5-62b4-4b61-aba8-6378b5eb424e
June 28, 2012
- Meg: Determination of ribonuclease sequence-specificity using Pentaprobes and mass spectrometry. PMID 22539524
- Brian: Ribosomal History Reveals Origins of Modern Protein Synthesis. PMID 22427882
May 31, 2012
- Katie: Coordinated regulation of accessory genetic elements produces cyclic di-nucleotides for V. cholerae virulence. PMID 22500802
- Carly: Structural Analysis of the STING Adaptor Protein Reveals a Hydrophobic Dimer Interface and Mode of Cyclic di-GMP Binding. PMID 22579474
- Dave : A new understanding of the decoding principle on the ribosome. PMID 22437501
April 19, 2012
- Rob: Riboswitch control of Rho-dependent transcription termination. PMID 22431636
- Karen: Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch. PMID 22331895
March 22, 2012
- Brian: Structural Basis for the Rescue of Stalled Ribosomes: Structure of YaeJ Bound to the Ribosome. PMID 22422986
- Meg: Two Programmed Cell Death Systems in E. Coli: An Apototic-like Death is Inhibited by the mazEF-Mediated Death Pathway PMID 22412352
- Katie: Allosteric Tertiary Interactions Preorganize the c-di-GMP Riboswitch and Accelerate Ligand Binding PMID 22380737
February 14, 2012
- Dave: Determinants of the cytotoxicity of PrrC anticodon nuclease and its amelioration by tRNA repair. PMID 22101242
- Carly: http://www.ncbi.nlm.nih.gov/pubmed/22308425
January 12, 2012
- Rob:PMID 21908395
- Karen: http://pubs.acs.org/doi/abs/10.1021/ja2096255
(ASAP article, not on pubmed yet)
- Jared: PMID 21516113
December 15, 2011
- Katie:PMID 21906956
- Brian:PMID 21857664
November 17, 2011
- Dave: PMID 22006298
- Carly: PMID 21947006
- Meg: PMID 21944167
October 19, 2011
- Rob: PMID 21841796
- Karen: PMID 20845359
September 22, 2011
- Katie:PMID 21867910
- Brian:PMID 21903932
August 25, 2011
- Carly: PMID 21798953
- Dave: PMID 21804565
- Meg: PMID 21788497
July 28, 2011
- Rob: PMID 21317896
- Karen: PMID 21732619
- Brian: PMID 21532598
July 6, 2011
- Carly: PMID 21532599
- Katie: PMID 21642531
- Rob: PMID 21317896
Riboswitches
January 17, 2011
- Katie: PMID 21151117
- Carly: PMID 20169626
- Rob: PMID 17277122
- Jared: PMID 20230605
October 20, 2010
- Rob: PMID 20129052 , Preview by Breaker that has better structural depiction - PMID 20129048
- Carly: PMID 20421948
- Dave: PMID 20108980
- Katie: PMID 20158266
- Ethan: PMID 20886091
September 28, 2010
- Thanh: PMID 19914169
- Rob: PMID 20659680
- Katie: PMID 20508090
- Carly: PMID 20453864
August 23, 2010
- Katie: PMID 20705859
- Carly: PMID 20677780
- Rob: PMID 20511502
- Thanh: PMID 20534493
July 19, 2010
- Katie: Paper- Weeks 2010, Methods - PMID 20597503
- Dave: PMID 20541014
- Thanh: PMID 18162543
- Carly: PMID 20106957
- Jared: PMID 20439766
- Rob: PMID 19547922
Biofuels
August 11, 2010
- Meghan: PMID 20120041
- Cambria: PMID 20599690
- Brian: PMID 20639866
- Jeff: PMID 8962148
- Dan: PMID 20622067
Ribosome
January 28, 2011
- Meghan: PMID 20852642 Nat Struct Mol Biol. (2010) 17:1241-6
- Brian: PMID 21169502
- Dave: DOI: 10.1021/ja01148a063
- http://pubs.acs.org/doi/abs/10.1021/ja01148a063
- (This is a very old paper but relevant to an experiment we could propose for ribosome-catalyzed peptide release)
October 28, 2010
- Brian D: PMID 20421507
- Dave H: DOI 10.1021/ja005519+
October 05, 2010
- Dave H: PMID 20393556
- Brian D: PMID 19696352
- Nicolas C: PMID 20876130
August 04, 2010
- dave: PMID 20080677
- Dave K: PMID 20375101
- Nicolas: PMID 20512119
- Brian: PMID 20631791
