OpenSourceMalaria:Triazolopyrazine (TP) Series: Difference between revisions

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'''Molecules and How to Visualize Them'''
'''Molecules and How to Visualize Them'''
 
[http://www.openmolecules.org/datawarrior/download.html] (general purpose open-source chemoinformatics software) <br>
[http://tinyurl.com/OSM-Compounds Google Sheet of all OSM Compounds] (Can filter Series 4).<br>
[http://tinyurl.com/OSM-Compounds Google Sheet of all OSM Compounds] (Can filter Series 4).<br>
[http://tinyurl.com/OSM-Assays Sister sheet that explains column headings (i.e. assays used)].<br>
[http://tinyurl.com/OSM-Assays Sister sheet that explains column headings (i.e. assays used)].<br>
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The '''Heterooxazole''' (unexplored amide isostere in side chain): [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/358 General discussion of the idea], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/407 Proposed synthesis], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/462 start of the synthesis], [http://malaria.ourexperiment.org/synthesis_of_hetero ELN]
The '''Heterooxazole''' (unexplored amide isostere in side chain): [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/358 General discussion of the idea], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/407 Proposed synthesis], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/462 start of the synthesis], [http://malaria.ourexperiment.org/synthesis_of_hetero ELN]
FC(F)OC(C=C1)=CC=C1C2=NN=C3C=NC=C(C4=CN=C(C5=CC=CC=C5)O4)N32
FC(F)OC(C=C1)=CC=C1C2=NN=C3C=NC=C(C4=CN=C(C5=CC=CC=C5)O4)N32 (free acid)
InChI=1S/C21H13F2N5O2/c22-21(23)29-15-8-6-13(7-9-15)19-27-26-18-12-24-10-16(28(18)19)17-11-25-20(30-17)14-4-2-1-3-5-14/h1-12,21H
InChI=1S/C21H13F2N5O2/c22-21(23)29-15-8-6-13(7-9-15)19-27-26-18-12-24-10-16(28(18)19)17-11-25-20(30-17)14-4-2-1-3-5-14/h1-12,21H
FBTBZFMQUBZDSN-UHFFFAOYSA-N
FBTBZFMQUBZDSN-UHFFFAOYSA-N
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KNVACGGMAGPRRW-UHFFFAOYSA-N
KNVACGGMAGPRRW-UHFFFAOYSA-N


The '''Internal Alkene''' (synthetically related to alkyne and alkyl compounds; [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/457 discussion of rationale of all three]; this compound configured (''Z'')-; also called "reduced alkyl" in places): [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/403 Discussed], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/431 starting synthesis], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/454 Discussion of NMR spectrum of intermediate], [http://malaria.ourexperiment.org/reduced_alkyl ELN]
The '''Internal Alkene/Reduced Alkyl''' (synthetically related to alkyne and alkyl compounds; [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/457 discussion of rationale of all three]; The SMILES string is only for the ''cis'' isomer: [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/403 Discussed], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/431 starting synthesis], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/454 Discussion of NMR spectrum of intermediate], [http://malaria.ourexperiment.org/reduced_alkyl ELN]
FC(F)OC(C=C1)=CC=C1C2=NN=C3C=NC=C(/C=C\C4=CC=CC=C4)N32
FC(F)OC(C=C1)=CC=C1C2=NN=C3C=NC=C(/C=C\C4=CC=CC=C4)N32
InChI=1S/C20H14F2N4O/c21-20(22)27-17-10-7-15(8-11-17)19-25-24-18-13-23-12-16(26(18)19)9-6-14-4-2-1-3-5-14/h1-13,20H/b9-6-
InChI=1S/C20H14F2N4O/c21-20(22)27-17-10-7-15(8-11-17)19-25-24-18-13-23-12-16(26(18)19)9-6-14-4-2-1-3-5-14/h1-13,20H/b9-6-
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NYRGMZUFRGWPBF-UHFFFAOYSA-N
NYRGMZUFRGWPBF-UHFFFAOYSA-N


The '''Nemesis''' (deplanarisation of northeast): [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/409 Haverford College synthetic plan], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/430 Start of first Haverford synthesis], [http://malaria.ourexperiment.org/hcnemesis16 ELN], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/466 Second phase of synthesis with same ELN].
The '''Nemesis''' (deplanarisation of right-hand-side): [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/409 Haverford College synthetic plan], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/430 Start of first Haverford synthesis], [http://malaria.ourexperiment.org/hcnemesis16 ELN], [https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/466 Second phase of synthesis with same ELN].
OC(C1=CC=CC=C1)COC2=CN=CC3=NN=C(C4CNCCC4)N32
OC(C1=CC=CC=C1)COC2=CN=CC3=NN=C(C4CNCCC4)N32
InChI=1S/C18H21N5O2/c24-15(13-5-2-1-3-6-13)12-25-17-11-20-10-16-21-22-18(23(16)17)14-7-4-8-19-9-14/h1-3,5-6,10-11,14-15,19,24H,4,7-9,12H2
InChI=1S/C18H21N5O2/c24-15(13-5-2-1-3-6-13)12-25-17-11-20-10-16-21-22-18(23(16)17)14-7-4-8-19-9-14/h1-3,5-6,10-11,14-15,19,24H,4,7-9,12H2
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