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Harmer Lab:Stacey Harmer: Difference between revisions
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I am | I am a professor in the [http://www-plb.ucdavis.edu/ Department of Plant Biology] at the [http://www.ucdavis.edu/index.html University of California, Davis]. My [[Harmer Lab|lab]] studies the molecular basis of circadian rhythms and how these daily rhythms affect plant physiology. | ||
==Contact Info== | ==Contact Info== | ||
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One of the great things about living in Davis is that we are close to the Sierra Nevada. For photos of some of my adventures there and elsewhere, please visit this simple [http://julinmaloof.net/ photo gallery]. Another wonderful thing about Davis is the twice-weekly [http://www.davisfarmersmarket.org/ Farmer's Market]. | One of the great things about living in Davis is that we are close to the Sierra Nevada. For photos of some of my adventures there and elsewhere, please visit this simple [http://julinmaloof.net/ photo gallery]. Another wonderful thing about Davis is the twice-weekly [http://www.davisfarmersmarket.org/ Farmer's Market]. | ||
==Publications== | ==Publications== | ||
*Harmer, S.L. (2010). Plant biology in the fourth dimension. Plant Physiology, 154:467 - 470. [http://www.plantphysiol.org | |||
*Anver, S., Roguev, A., Zofall, M., Krogan, N.J., Grewal, S.I.S., and Harmer, S.L. (2014) Yeast X-Chromosome Associated Protein 5 (Xap5) Functions with H2A.Z to Suppress Aberrant Transcripts. EMBO reports. pii: e201438902. [http://onlinelibrary.wiley.com/doi/10.15252/embr.201438902/abstract] | |||
*Hsu, P.Y. and Harmer, S.L. (2014) Global profiling of the circadian transcriptome using microarrays. Methods in Molecular Biology. 1158:45-56 [http://link.springer.com/protocol/10.1007%2F978-1-4939-0700-7_3] | |||
*Hsu, P.Y. and Harmer, S.L. (2013) Wheels within wheels: the plant circadian system. Trends in Plant Science [http://dx.doi.org/10.1016/j.tplants.2013.11.007] | |||
*Hsu, P.Y., Devisetty, U.K., and Harmer, S.L. (2013) Cycling activators control the evening arm of the plant clock. eLife. 2:e00473. [http://elifesciences.org/content/2/e00473] | |||
*Zemach, A., Kim, M.Y., Hsieh, P.-H., Coleman-Derr,D., Eshed-Williams, L., Thao, K, Harmer, S.L., and Zilberman, D. (2013) The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell 153(1):193-205 [http://www.cell.com/abstract/S0092-8674%2813%2900222-5] | |||
*Hu, W., Franklin, K.A., Sharrock, R.A., Jones, M.A., Harmer, S.L., and Lagarias, J.C. (2013) Unanticipated regulatory roles for Arabidopsis phytochromes revealed by null mutant analysis. Proceedings of the National Academy of the Sciences, 110(4) 1542-1547. [http://www.pnas.org/content/110/4/1542.abstract] | |||
*Hsu, P.Y. and Harmer, S.L. (2012) Circadian phase has profound effects on differential expression analysis. PLoS One, 7(11):e49853 [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0049853] | |||
*Jones, M.A., Williams, B.A., McNicol J., Simpson, C.G., Brown, J.W., and Harmer, S.L. (2012) Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS 1 causes circadian clock defects. Plant Cell, 24(10):4066-82 [http://www.plantcell.org/content/24/10/4066.long] | |||
*Nozue, K., Harmer. S.L., and Maloof, J.N. (2011) Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PIF5 as a modulator of auxin signaling in Arabidopsis. Plant Physiology, 156(1): 357-372 [http://www.plantphysiol.org/content/156/1/357?cited-by=yes&legid=plantphysiol;156/1/357] | |||
*Rawat, R., Takahashi, N., Hsu, P.Y., Jones, M.A., Schwartz, J., Salemi, M.R., Phinney, B.S., and Harmer, S.L. (2011) REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock. PLoS Genetics, 7(3): e1001350. [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001350] | |||
*Kerwin, R.E., Jimenez-Gomez, J.M., Fulop, D., Harmer, S.L., Maloof, J.N., Kliebenstein, D.J. (2011) Network QTL mapping of circadian clock outputs identifies metabolic pathway to clock linkages in Arabidopsis. Plant Cell, 23(2):471-85 [http://www.plantcell.org/content/23/2/471.full] | |||
*Jones, M.A., and Harmer, S.L. (2011) JMJD5 functions in concert with TOC1 in the Arabidopsis circadian system. Plant Signaling & Behavior 6(3): 1-4. [http://dx.doi.org/10.4161/psb.6.3.14654] | |||
*Jones, M.A., Covington, M.F., Ditacchio, L., Vollmers, C., Panda, S., Harmer, S.L. (2010) Jumonji domain protein JMJD5 functions in both the plant and human circadian systems. Proceedings of the National Academy of the Sciences 107(50): 21623-21628. [http://www.pnas.org/content/107/50/21623.full] | |||
*Ellison ,C.T., Vandenbussche, F., Van Der Straeten, D., Harmer, S.L. (2011) XAP5 CIRCADIAN TIMEKEEPER regulates ethylene responses in aerial tissues of Arabidopsis. Plant Physiology, 155(2):988-999. [http://www.plantphysiol.org/content/155/2/988.full] | |||
*Harmer, S.L. (2010). Plant biology in the fourth dimension. Plant Physiology, 154:467 - 470. [http://www.plantphysiol.org/content/154/2/467.full] | |||
*Rawat, R., Schwartz, J., Jones, M.A., Sairanen, I., Cheng, Y., Andersson, C.R., Zhao, Y., Ljung, K., and Harmer, S.L. (2009). REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways. Proceedings of the National Academy of the Sciences 106(39) 16883-16888. [http://www.pnas.org/content/106/39/16883.long] | *Rawat, R., Schwartz, J., Jones, M.A., Sairanen, I., Cheng, Y., Andersson, C.R., Zhao, Y., Ljung, K., and Harmer, S.L. (2009). REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways. Proceedings of the National Academy of the Sciences 106(39) 16883-16888. [http://www.pnas.org/content/106/39/16883.long] | ||
