developer
3,125
edits
Synthetic Biology:Semantic web ontology/Examples: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
Synthetic Biology:Semantic web ontology/Examples (view source)
Revision as of 21:20, 8 February 2008
, 8 February 2008→Metadata applications
| Line 120: | Line 120: | ||
**MetamorphoSys is the UMLS installation wizard and customization tool included in each UMLS release. | **MetamorphoSys is the UMLS installation wizard and customization tool included in each UMLS release. | ||
*[http://www.snomed.org/ SNOMED Clinical Terms® (SNOMED CT®)] is the universal health care terminology that makes health care knowledge usable and accessible wherever and whenever it is needed (included in UMLS since 2003). [http://www.connectingforhealth.nhs.uk/technical/standards/snomed/browser/ SNOMED browser]. | *[http://www.snomed.org/ SNOMED Clinical Terms® (SNOMED CT®)] is the universal health care terminology that makes health care knowledge usable and accessible wherever and whenever it is needed (included in UMLS since 2003). [http://www.connectingforhealth.nhs.uk/technical/standards/snomed/browser/ SNOMED browser]. | ||
*[http://pkb.stanford.edu/ Pathway Knowledge Base (PKB)] @ Stanford - integrated human, ecoli and yeast pathway data in BioPAX format from Kegg, BioCyc and Reactome. The underlying data is stored in an RDF triple store and all queries are made directly on the BioPAX model. This has some drawbacks in terms of performance but has allowed us to preserve the semantics specified in the BioPAX model. | *[http://pkb.stanford.edu/ Pathway Knowledge Base (PKB)] @ Stanford - integrated human, ecoli and yeast pathway data in BioPAX format from Kegg, BioCyc and Reactome. The underlying data is stored in an RDF triple store and all queries are made directly on the BioPAX model. This has some drawbacks in terms of performance but has allowed us to preserve the semantics specified in the BioPAX model. | ||
*[http://bibster.semanticweb.org/ Bibster] - A Semantics-Based Bibliographic Peer-to-Peer System | *[http://bibster.semanticweb.org/ Bibster] - A Semantics-Based Bibliographic Peer-to-Peer System | ||
| Line 129: | Line 128: | ||
*[http://labs.intellidimension.com/demo/default.rsp Intellidimension Labs] - A Collection of RDF Gateway Demos, Examples, and Experiments (Uniprot, etc) | *[http://labs.intellidimension.com/demo/default.rsp Intellidimension Labs] - A Collection of RDF Gateway Demos, Examples, and Experiments (Uniprot, etc) | ||
**[http://www.semanticwebsearch.com/ Intellidimension Semantic Web Search] | **[http://www.semanticwebsearch.com/ Intellidimension Semantic Web Search] | ||
*[http://semanticmoby.org/ Semantic MOBY] | *[http://semanticmoby.org/ Semantic MOBY] or [http://sswap.info/ Simple Semantic Web Architecture and Protocol] | ||
**drives the search of Virtual Plant Information Network ([http://vpin.ncgr.org/ VPIN]) - a consortium of information resources using emerging semantic web services technologies | |||
**[http://lin.ncgr.org/ The Legume Information Network (LIN)] is a prototype to demonstrate the power of semantic-MOBY framework to integrate disparate data sources into a virtual legume information network | |||
*[http://bioontology.org/resources.html National Center for Biomedical Ontology]: | *[http://bioontology.org/resources.html National Center for Biomedical Ontology]: | ||
**A virtual library of Open Biomedical Ontologies (OBO). | **A virtual library of Open Biomedical Ontologies (OBO). | ||
